5LBF

HIF prolyl hydroxylase 2 (PHD2/EGLN1) K293K/G294E variant in complex with Mn(II) and N-[(1-chloro-4-hydroxyisoquinolin-3-yl)carbonyl]glycine (IOX3/FG2216)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.160

Literature

Macromolecules
Sequence Display for 5LBF

Classification: OXIDOREDUCTASE

Total Structure Weight: 28772.82

Macromolecule Entities
Molecule Chains Length Organism Details
Egl nine homolog 1 A 252 Homo sapiens EC#: 1.14.11.29 IUBMB
Fragment: CATALYTIC DOMAIN (181-426)
Mutation: N293K, G294E
Details: FRAGMENT: CATALYTIC DOMAIN (181-426)
Gene Name(s): EGLN1 Gene View C1orf12 PNAS-118 PNAS-137
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UN9
Query on UN9

A N-[(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL)CARBONYL]GLYCINE
C12 H9 Cl N2 O4
OUQVKRKGTAUJQA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BCT
Query on BCT

A BICARBONATE ION
C H O3
BVKZGUZCCUSVTD-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.160
  • Space Group: P 63

Unit Cell:

Length (Å) Angle (°)
a = 109.77 α = 90.00
b = 109.77 β = 90.00
c = 39.54 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-06-16
  • Released Date: 2016-08-31
  • Deposition author(s): Chowdhury, R., Schofield, C.J.

Revision History

  • 2016-09-07
    Type: Database references