5GJR

An atomic structure of the human 26S proteasome


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.5 Å
  • Aggregation State: Particle
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 5GJR

Classification: HYDROLASE

Total Structure Weight: 2567657.00

Macromolecule Entities
Molecule Chains Length Organism Details
26S protease regulatory subunit 4 I, w 440 Homo sapiens Gene Name(s): PSMC1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
26S protease regulatory subunit 7 H, v 433 Homo sapiens Gene Name(s): PSMC2 Gene View MSS1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
26S protease regulatory subunit 10B L, z 389 Homo sapiens Gene Name(s): PSMC6 Gene View SUG2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
26S protease regulatory subunit 6A 0, M 439 Homo sapiens Gene Name(s): PSMC3 Gene View TBP1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
26S protease regulatory subunit 8 J, x 406 Homo sapiens Gene Name(s): PSMC5 Gene View SUG1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
26S protease regulatory subunit 6B K, y 418 Homo sapiens Gene Name(s): PSMC4 Gene View MIP224 TBP7
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
26S proteasome non-ATPase regulatory subunit 1 1, N 953 Homo sapiens Gene Name(s): PSMD1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
26S proteasome non-ATPase regulatory subunit 13 2, O 376 Homo sapiens Gene Name(s): PSMD13 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
26S proteasome non-ATPase regulatory subunit 12 3, P 456 Homo sapiens Gene Name(s): PSMD12 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
26S proteasome non-ATPase regulatory subunit 11 4, Q 422 Homo sapiens Gene Name(s): PSMD11 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
26S proteasome non-ATPase regulatory subunit 6 5, R 389 Homo sapiens Gene Name(s): PSMD6 Gene View KIAA0107 PFAAP4
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
26S proteasome non-ATPase regulatory subunit 3 6, S 525 Homo sapiens Fragment: UNP RESIDUES 1-525
Gene Name(s): PSMD3 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
26S proteasome non-ATPase regulatory subunit 8 7, T 350 Homo sapiens Gene Name(s): PSMD8 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
26S proteasome non-ATPase regulatory subunit 7 8, U 324 Homo sapiens Gene Name(s): PSMD7 Gene View MOV34L
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
26S proteasome non-ATPase regulatory subunit 14 9, V 310 Homo sapiens EC#: 3.4.19 IUBMB
Gene Name(s): PSMD14 Gene View POH1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
26S proteasome non-ATPase regulatory subunit 4 AA, W 377 Homo sapiens Gene Name(s): PSMD4 Gene View MCB1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
26S proteasome complex subunit DSS1 AB, Y 70 Homo sapiens Gene Name(s): SHFM1 DSS1 SHFDG1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
26S proteasome non-ATPase regulatory subunit 2 AC, Z 908 Homo sapiens Gene Name(s): PSMD2 Gene View TRAP2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Proteasome subunit alpha type-6 B, h 246 Homo sapiens EC#: 3.4.25.1 IUBMB
Gene Name(s): PSMA6 Gene View PROS27
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Proteasome subunit alpha type-2 C, i 234 Homo sapiens EC#: 3.4.25.1 IUBMB
Gene Name(s): PSMA2 Gene View HC3 PSC3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Proteasome subunit alpha type-4 D, j 261 Homo sapiens EC#: 3.4.25.1 IUBMB
Gene Name(s): PSMA4 Gene View HC9 PSC9
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Proteasome subunit alpha type-7 E, k 248 Homo sapiens EC#: 3.4.25.1 IUBMB
Gene Name(s): PSMA7 Gene View HSPC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Proteasome subunit alpha type-5 F, l 241 Homo sapiens EC#: 3.4.25.1 IUBMB
Gene Name(s): PSMA5 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Proteasome subunit alpha type-1 G, m 263 Homo sapiens EC#: 3.4.25.1 IUBMB
Gene Name(s): PSMA1 Gene View HC2 NU PROS30 PSC2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Proteasome subunit alpha type-3 X, n 255 Homo sapiens EC#: 3.4.25.1 IUBMB
Gene Name(s): PSMA3 Gene View HC8 PSC8
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Proteasome subunit beta type-6 a, o 239 Homo sapiens EC#: 3.4.25.1 IUBMB
Gene Name(s): PSMB6 Gene View LMPY Y
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Proteasome subunit beta type-7 b, p 277 Homo sapiens EC#: 3.4.25.1 IUBMB
Gene Name(s): PSMB7 Gene View Z
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Proteasome subunit beta type-3 c, q 205 Homo sapiens EC#: 3.4.25.1 IUBMB
Gene Name(s): PSMB3 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Proteasome subunit beta type-2 d, r 201 Homo sapiens EC#: 3.4.25.1 IUBMB
Gene Name(s): PSMB2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Proteasome subunit beta type-5 e, s 263 Homo sapiens EC#: 3.4.25.1 IUBMB
Gene Name(s): PSMB5 Gene View LMPX MB1 X
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Proteasome subunit beta type-1 f, t 241 Homo sapiens EC#: 3.4.25.1 IUBMB
Gene Name(s): PSMB1 Gene View PSC5
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Proteasome subunit beta type-4 g, u 264 Homo sapiens EC#: 3.4.25.1 IUBMB
Gene Name(s): PSMB4 Gene View PROS26
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

0, H, I, J, K, L, M, v, w, x, y, z ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.5 Å
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2016-07-01
  • Released Date: 2016-09-07
  • Deposition author(s): Huang, X.L., Luan, B., Wu, J.P., Shi, Y.G.

Revision History

  • Version 1_0: 2016-09-07

    Type: Initial release

  • Version 1_1: 2017-04-05

    Type: Database references