5A3U

HIF prolyl hydroxylase 2 (PHD2/EGLN1) in complex with 6-(5-oxo-4-(1H- 1,2,3-triazol-1-yl)-2,5-dihydro-1H-pyrazol-1-yl)nicotinic acid


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.202

Literature

Macromolecules
Sequence Display for 5A3U

Classification: OXIDOREDUCTASE

Total Structure Weight: 85272.30

Macromolecule Entities
Molecule Chains Length Organism Details
EGL NINE HOMOLOG 1 A, B, C 252 Homo sapiens EC#: 1.14.11.29 IUBMB
Fragment: CATALYTIC DOMAIN, RESIDUES 181-426
Gene Name(s): EGLN1 Gene View C1orf12 PNAS-118 PNAS-137
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
R8J
Query on R8J

A, B, C 6-(5-oxo-4-(1H-1,2,3-triazol-1-yl)-2,5-dihydro- 1H-pyrazol-1-yl)nicotinic acid
C11 H8 N6 O3
MRJSXXCYZJCFSP-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, B, C MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.202
  • Space Group: P 32 1 2

Unit Cell:

Length (Å) Angle (°)
a = 154.94 α = 90.00
b = 154.94 β = 90.00
c = 85.40 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-06-03
  • Released Date: 2015-06-17
  • Deposition author(s): Chowdhury, R., Gomez-Perez, V., Schofield, C.J.

Revision History

  • 2015-07-22
    Type: Database references