5ZWK
Crystal structure of Human liver fructose-1,6-bisphoaphatase complex with fructose-1,6-bisphophate and AMP
- PDB DOI: https://doi.org/10.2210/pdb5ZWK/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No 
- Deposited: 2018-05-15 Released: 2019-05-15 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.241 
- R-Value Work: 0.194 
- R-Value Observed: 0.196 
This is version 1.2 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Fructose-1,6-bisphosphatase 1 | 348 | Homo sapiens | Mutation(s): 0  Gene Names: FBP1, hCG_1640493 | ||
UniProt | |||||
Find proteins for Q2TU34 (Homo sapiens) Explore Q2TU34  Go to UniProtKB:  Q2TU34 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2TU34 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
AMP Query on AMP | F [auth A], J [auth B], N [auth C], R [auth D] | ADENOSINE MONOPHOSPHATE C10 H14 N5 O7 P UDMBCSSLTHHNCD-KQYNXXCUSA-N | |||
FBP Query on FBP | E [auth A], I [auth B], M [auth C], Q [auth D] | 1,6-di-O-phosphono-beta-D-fructofuranose C6 H14 O12 P2 RNBGYGVWRKECFJ-ARQDHWQXSA-N | |||
MG Query on MG | G [auth A] H [auth A] K [auth B] L [auth B] O [auth C] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.241 
- R-Value Work: 0.194 
- R-Value Observed: 0.196 
- Space Group: P 1 21 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 66.006 | α = 90 |
b = 155.746 | β = 115.54 |
c = 76.082 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
XDS | data reduction |
Aimless | data scaling |
PHASER | phasing |
Entry History 
Deposition Data
- Released Date: 2019-05-15  Deposition Author(s): Yunyuan, H., Zeyuan, G., Junjie, Y., Ping, Y., Jian, W.
Revision History (Full details and data files)
- Version 1.0: 2019-05-15
Type: Initial release - Version 1.1: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.2: 2023-11-22
Changes: Data collection, Database references, Refinement description, Structure summary