5LSJ

CRYSTAL STRUCTURE OF THE HUMAN KINETOCHORE MIS12-CENP-C delta-HEAD2 COMPLEX


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Free: 0.297 
  • R-Value Work: 0.246 
  • R-Value Observed: 0.249 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structure of the MIS12 Complex and Molecular Basis of Its Interaction with CENP-C at Human Kinetochores.

Petrovic, A.Keller, J.Liu, Y.Overlack, K.John, J.Dimitrova, Y.N.Jenni, S.van Gerwen, S.Stege, P.Wohlgemuth, S.Rombaut, P.Herzog, F.Harrison, S.C.Vetter, I.R.Musacchio, A.

(2016) Cell 167: 1028-1040.e15

  • DOI: https://doi.org/10.1016/j.cell.2016.10.005
  • Primary Citation of Related Structures:  
    5LSI, 5LSJ, 5LSK

  • PubMed Abstract: 

    Kinetochores, multisubunit protein assemblies, connect chromosomes to spindle microtubules to promote chromosome segregation. The 10-subunit KMN assembly (comprising KNL1, MIS12, and NDC80 complexes, designated KNL1C, MIS12C, and NDC80C) binds microtubules and regulates mitotic checkpoint function through NDC80C and KNL1C, respectively. MIS12C, on the other hand, connects the KMN to the chromosome-proximal domain of the kinetochore through a direct interaction with CENP-C. The structural basis for this crucial bridging function of MIS12C is unknown. Here, we report crystal structures of human MIS12C associated with a fragment of CENP-C and unveil the role of Aurora B kinase in the regulation of this interaction. The structure of MIS12:CENP-C complements previously determined high-resolution structures of functional regions of NDC80C and KNL1C and allows us to build a near-complete structural model of the KMN assembly. Our work illuminates the structural organization of essential chromosome segregation machinery that is conserved in most eukaryotes.


  • Organizational Affiliation

    Department of Mechanistic Cell Biology, Max Planck Institute of Molecular Physiology, Otto-Hahn-Straße 11, 44227 Dortmund, Germany. Electronic address: arsen.petrovic@mpi-dortmund.mpg.de.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein MIS12 homologA,
F [auth C]
205Homo sapiensMutation(s): 0 
Gene Names: MIS12
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H081 (Homo sapiens)
Explore Q9H081 
Go to UniProtKB:  Q9H081
PHAROS:  Q9H081
GTEx:  ENSG00000167842 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9H081
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Polyamine-modulated factor 1B,
G [auth E]
176Homo sapiensMutation(s): 0 
Gene Names: PMF1
UniProt & NIH Common Fund Data Resources
Find proteins for Q6P1K2 (Homo sapiens)
Explore Q6P1K2 
Go to UniProtKB:  Q6P1K2
PHAROS:  Q6P1K2
GTEx:  ENSG00000160783 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6P1K2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Kinetochore-associated protein DSN1 homologC [auth D],
H [auth F]
178Homo sapiensMutation(s): 0 
Gene Names: DSN1C20orf172MIS13
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H410 (Homo sapiens)
Explore Q9H410 
Go to UniProtKB:  Q9H410
PHAROS:  Q9H410
GTEx:  ENSG00000149636 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9H410
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Kinetochore-associated protein NSL1 homologD [auth N],
I [auth G]
116Homo sapiensMutation(s): 0 
Gene Names: NSL1C1orf48DC31DC8MIS14
UniProt & NIH Common Fund Data Resources
Find proteins for Q96IY1 (Homo sapiens)
Explore Q96IY1 
Go to UniProtKB:  Q96IY1
PHAROS:  Q96IY1
GTEx:  ENSG00000117697 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96IY1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein CE [auth P],
J [auth Q]
76Homo sapiensMutation(s): 0 
Gene Names: CENPCCENPC1ICEN7
UniProt & NIH Common Fund Data Resources
Find proteins for Q03188 (Homo sapiens)
Explore Q03188 
Go to UniProtKB:  Q03188
PHAROS:  Q03188
GTEx:  ENSG00000145241 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ03188
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Free: 0.297 
  • R-Value Work: 0.246 
  • R-Value Observed: 0.249 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 68.16α = 90
b = 156.4β = 102.82
c = 76γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
XSCALEdata scaling
PHASERphasing
XDSdata reduction

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-11-16
    Type: Initial release
  • Version 1.1: 2016-12-07
    Changes: Database references
  • Version 1.2: 2017-10-11
    Changes: Data collection
  • Version 1.3: 2024-01-17
    Changes: Data collection, Database references, Refinement description