5I74

X-ray structure of the ts3 human serotonin transporter complexed with Br-citalopram at the central site


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.39 Å
  • R-Value Free: 0.296
  • R-Value Work: 0.249

Literature

Macromolecules
Sequence Display for 5I74

Classification: MEMBRANE PROTEIN

Total Structure Weight: 110567.23

Macromolecule Entities
Molecule Chains Length Organism Details
Sodium-dependent serotonin transporter A 549 Homo sapiens Mutation: Y110A, I291A, T439S, C554A, C580A
Gene Name(s): SLC6A4 Gene View HTT Gene View SERT
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
8B6 antibody, heavy chain B 221 Mus musculus
8B6 antibody, light chain C 214 Mus musculus

Membrane Protein

Source: inferred by homology | Group: ALPHA-HELICAL

Subgroup Name: Solute Carrier (SLC) Transporter Superfamily

Protein Name: Serotonin transporter (SERT) ts3 construct with bound paroxetine at central site


Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CLR
Query on CLR

A CHOLESTEROL
C27 H46 O
HVYWMOMLDIMFJA-DPAQBDIFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
69D
Query on 69D

A (1S)-1-(4-bromophenyl)-1-[3-(dimethylamino)propyl]- 1,3-dihydro-2-benzofuran-5-carbonitrile
C20 H21 Br N2 O
SOYXTZZNZQFLGF-FQEVSTJZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
D12
Query on D12

A DODECANE
C12 H26
SNRUBQQJIBEYMU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HEX
Query on HEX

A HEXANE
C6 H14
VLKZOEOYAKHREP-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.39 Å
  • R-Value Free: 0.296
  • R-Value Work: 0.249
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 129.59 α = 90.00
b = 164.00 β = 90.00
c = 140.17 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-02-16
  • Released Date: 2016-04-13
  • Deposition author(s): Coleman, J.A., Green, E.M., Gouaux, E.

Revision History

  • 2016-04-20
    Type: Database references
  • 2016-05-04
    Type: Database references