4ZK9
The chemokine binding protein of orf virus complexed with CCL2
- PDB DOI: https://doi.org/10.2210/pdb4ZK9/pdb
- Classification: Viral Protein/cytokine
- Organism(s): Orf virus (strain NZ2), Homo sapiens
- Expression System: Homo sapiens
- Mutation(s): No 
- Deposited: 2015-04-30 Released: 2015-07-08 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.281 
- R-Value Work: 0.238 
- R-Value Observed: 0.241 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Chemokine binding protein | 276 | Orf virus (strain NZ2) | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for Q2F862 (Orf virus) Explore Q2F862  Go to UniProtKB:  Q2F862 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2F862 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
C-C motif chemokine 2 | 83 | Homo sapiens | Mutation(s): 0  Gene Names: CCL2, MCP1, SCYA2 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P13500 (Homo sapiens) Explore P13500  Go to UniProtKB:  P13500 | |||||
PHAROS:  P13500 GTEx:  ENSG00000108691  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P13500 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.281 
- R-Value Work: 0.238 
- R-Value Observed: 0.241 
- Space Group: P 43 21 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 78.802 | α = 90 |
b = 78.802 | β = 90 |
c = 185.613 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
XDS | data reduction |
SCALA | data scaling |
PHASER | phasing |
Entry History 
Deposition Data
- Released Date: 2015-07-08  Deposition Author(s): Knapp, K.M., Nakatani, Y., Krause, K.L.
Revision History (Full details and data files)
- Version 1.0: 2015-07-08
Type: Initial release - Version 1.1: 2015-07-15
Changes: Database references - Version 1.2: 2018-06-13
Changes: Data collection, Database references, Derived calculations, Source and taxonomy, Structure summary - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-09-27
Changes: Data collection, Database references, Refinement description, Structure summary