4Z6G

Structure of NT domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.208 
  • R-Value Observed: 0.210 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

In vivo epidermal migration requires focal adhesion targeting of ACF7.

Yue, J.Zhang, Y.Liang, W.G.Gou, X.Lee, P.Liu, H.Lyu, W.Tang, W.J.Chen, S.Y.Yang, F.Liang, H.Wu, X.

(2016) Nat Commun 7: 11692-11692

  • DOI: https://doi.org/10.1038/ncomms11692
  • Primary Citation of Related Structures:  
    4Z6G

  • PubMed Abstract: 

    Turnover of focal adhesions allows cell retraction, which is essential for cell migration. The mammalian spectraplakin protein, ACF7 (Actin-Crosslinking Factor 7), promotes focal adhesion dynamics by targeting of microtubule plus ends towards focal adhesions. However, it remains unclear how the activity of ACF7 is regulated spatiotemporally to achieve focal adhesion-specific guidance of microtubule. To explore the potential mechanisms, we resolve the crystal structure of ACF7's NT (amino-terminal) domain, which mediates F-actin interactions. Structural analysis leads to identification of a key tyrosine residue at the calponin homology (CH) domain of ACF7, whose phosphorylation by Src/FAK (focal adhesion kinase) complex is essential for F-actin binding of ACF7. Using skin epidermis as a model system, we further demonstrate that the phosphorylation of ACF7 plays an indispensable role in focal adhesion dynamics and epidermal migration in vitro and in vivo. Together, our findings provide critical insights into the molecular mechanisms underlying coordinated cytoskeletal dynamics during cell movement.


  • Organizational Affiliation

    Ben May Department for Cancer Research, The University of Chicago, 929 East 57th Street, Chicago, Illinois 60637, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5348Homo sapiensMutation(s): 0 
Gene Names: MACF1ABP620ACF7KIAA0465KIAA1251
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UPN3 (Homo sapiens)
Explore Q9UPN3 
Go to UniProtKB:  Q9UPN3
PHAROS:  Q9UPN3
GTEx:  ENSG00000127603 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9UPN3
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.208 
  • R-Value Observed: 0.210 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 94.088α = 90
b = 94.088β = 90
c = 192.634γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
SHELXLdata reduction
HKL-2000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-04-06
    Type: Initial release
  • Version 1.1: 2016-06-01
    Changes: Database references
  • Version 1.2: 2023-11-08
    Changes: Data collection, Database references, Derived calculations, Refinement description