4FQP

Crystal structure of human Nectin-like 5 full ectodomain (D1-D3)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.6 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.248

Literature

Macromolecules
Sequence Display for 4FQP

Classification: CELL ADHESION

Total Structure Weight: 38371.40

Macromolecule Entities
Molecule Chains Length Organism Details
Poliovirus receptor A 313 Homo sapiens Fragment: ectodomain (D1-D3, UNP residues 28-334)
Gene Name(s): PVR Gene View PVS
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

A ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUC
Query on FUC

A ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.6 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.248
  • Space Group: P 65 2 2

Unit Cell:

Length (Å) Angle (°)
a = 138.92 α = 90.00
b = 138.92 β = 90.00
c = 273.64 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-06-25
  • Released Date: 2012-08-22
  • Deposition author(s): Harrison, O.J., Jin, X., Brasch, J., Shapiro, L.

Revision History

  • 2012-09-05
    Type: Database references
  • 2012-09-26
    Type: Database references