3TDT

COMPLEX OF TETRAHYDRODIPICOLINATE N-SUCCINYLTRANSFERASE WITH 2-AMINO-6-OXOPIMELATE AND COENZYME A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.152

Literature

Macromolecules
Sequence Display for 3TDT

Classification: ACYLTRANSFERASE

Total Structure Weight: 30875.69

Macromolecule Entities
Molecule Chains Length Organism Details
TETRAHYDRODIPICOLINATE N-SUCCINYLTRANSFERASE A 274 Mycobacterium bovis EC#: 2.3.1.117 IUBMB
Gene Name(s): dapD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
COA
Query on COA

A COENZYME A
C21 H36 N7 O16 P3 S
RGJOEKWQDUBAIZ-IBOSZNHHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
26P
Query on 26P

A 2-AMINO-6-OXOPIMELIC ACID
C7 H11 N O5
UKCSFKLWNHUBDY-BYPYZUCNSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.152
  • Space Group: H 3

Unit Cell:

Length (Å) Angle (°)
a = 96.00 α = 90.00
b = 96.00 β = 90.00
c = 72.30 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-05-06
  • Released Date: 1998-10-14
  • Deposition author(s): Beaman, T.W., Blanchard, J.S., Roderick, S.L.

Revision History

  • 2008-03-25
    Type: Version format compliance
  • 2011-07-13
    Type: Derived calculations, Version format compliance