3TNW

Structure of CDK2/cyclin A in complex with CAN508


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 3TNW

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 128920.88

Macromolecule Entities
Molecule Chains Length Organism Details
Cyclin-dependent kinase 2 A, C 300 Homo sapiens EC#: 2.7.11.22 IUBMB
Gene Name(s): CDK2 Gene View CDKN2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Cyclin-A2 B, D 262 Bos taurus Fragment: cyclin boxes, UNP resdiues 169-430
Gene Name(s): CCNA2 Gene View CCNA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
F18
Query on F18

A, C 4-[(E)-(3,5-DIAMINO-1H-PYRAZOL-4-YL)DIAZENYL]PHENOL
CAN508 (Synonym)
C9 H10 N6 O
AYZRKFOEZQBUEA-SEYXRHQNSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

D SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
F18 IC50: 20000 nM (100) BindingDB
Ki: 69000 nM (96) BindingDB

N/A in BindingMoad
N/A in PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
TPO
Query on TPO
A, C L-PEPTIDE LINKING C4 H10 N O6 P THR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.186
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 74.05 α = 90.00
b = 134.57 β = 90.00
c = 148.28 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-09-02
  • Released Date: 2012-02-15
  • Deposition author(s): Baumli, S., Hole, A.J., Endicott, J.A.

Revision History

  • 2012-05-30
    Type: Database references