3RD9

Human Cyclophilin D Complexed with a Fragment


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.150
  • R-Value Work: 0.122

Literature

Macromolecules
Sequence Display for 3RD9

Classification: ISOMERASE / ISOMERASE INHIBITOR

Total Structure Weight: 18229.80

Macromolecule Entities
Molecule Chains Length Organism Details
Peptidyl-prolyl cis-trans isomerase F, mitochondrial X 166 Homo sapiens EC#: 5.2.1.8 IUBMB
Fragment: UNP residues 43-207
Mutation: K175I
Gene Name(s): PPIF Gene View CYP3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MSY
Query on MSY

X 3-(3-methyl-5-oxo-4,5-dihydro-1H-pyrazol- 1-yl)benzenesulfonamide
C10 H11 N3 O3 S
ASVVGQURNHNITH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

X DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.150
  • R-Value Work: 0.122
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 57.21 α = 90.00
b = 57.21 β = 90.00
c = 87.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-04-01
  • Released Date: 2012-03-21
  • Deposition author(s): Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

Revision History

  • 2016-10-19
    Type: Database references