3QZ0

Structure of Treponema denticola Factor H Binding protein (FhbB), selenomethionine derivative

Structural Biology Knowledgebase: 3QZ0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.77 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.189

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3QZ0

Classification: PROTEIN BINDING

Total Structure Weight: 21610.20

Macromolecule Entities
Molecule Chains Length Organism Details
Factor H binding protein A, B 93 Treponema denticola Fragment: residues 24-102
Gene Name(s): TDE_0108
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SCN
Query on SCN

B THIOCYANATE ION
C N S
ZMZDMBWJUHKJPS-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.77 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.189
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 46.92 α = 90.00
b = 46.92 β = 90.00
c = 168.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-03-04
  • Released Date: 2012-03-07
  • Deposition author(s): Miller, D.P., McDowell, J.V., Heroux, A., Bell, J.K., Marconi, R.T., Conrad, D.H., Burgner, J.W.

Revision History

  • 2012-06-20
    Type: Citation | Details: Citation update
  • 2012-04-25
    Type: Citation | Details: Citation update
  • 2012-03-21
    Type: Entry authorship | Details: --