3PWY

Crystal structure of an extender (SPD28345)-modified human PDK1 complex 2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.220

Literature

Macromolecules
Sequence Display for 3PWY

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 35729.13

Macromolecule Entities
Molecule Chains Length Organism Details
3-phosphoinositide-dependent protein kinase 1 A 311 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: kinase domain (UNP residues 51-359)
Mutation: E166C, C260S
Gene Name(s): PDPK1 Gene View PDK1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SYP
Query on SYP

A N-[2-({6-[(2-sulfanylethyl)amino]pyrimidin- 4-yl}amino)ethyl]propanamide
C11 H19 N5 O S
MXLYIGOSAJROJY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.220
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 122.38 α = 90.00
b = 122.38 β = 90.00
c = 47.63 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-12-09
  • Released Date: 2011-04-20
  • Deposition author(s): Elling, R.A., Penny, D.M., Simmons, R.L., Erlanson, D.A., Romanowski, M.J.

Revision History

  • Version 1_0: 2011-04-20

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance