3E9L

Crystal Structure of Human Prp8, Residues 1755-2016


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 3E9L

Classification: RNA BINDING PROTEIN SPLICING

Total Structure Weight: 29593.67

Macromolecule Entities
Molecule Chains Length Organism Details
Pre-mRNA-processing-splicing factor 8 A 257 Homo sapiens Fragment: endonuclease domain
Gene Name(s): PRPF8 Gene View PRPC8
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.205
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 83.43 α = 90.00
b = 83.43 β = 90.00
c = 96.26 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-08-22
  • Released Date: 2008-10-07
  • Deposition author(s): Pena, V., Rozov, A., Wahl, M.C.

Revision History

  • 2011-07-13
    Type: Advisory, Version format compliance