2ZJJ

Crystal structure of the human BACE1 catalytic domain in complex with 4-(4-fluoro-benzyl)-piperazine-2-carboxylic acid (2-mercapto-ethyl)-amide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.229

Literature

Macromolecules
Sequence Display for 2ZJJ

Classification: HYDROLASE

Total Structure Weight: 45422.18

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-secretase 1 A 405 Homo sapiens EC#: 3.4.23.46 IUBMB 4.3.1.23 IUBMB
Fragment: BACE1 catalytic domain, UNP residues 43-446
Mutation: K75A, E77A, T231C
Gene Name(s): BACE1 Gene View BACE KIAA1149
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
F1J
Query on F1J

A (2S)-4-(4-fluorobenzyl)-N-(2-sulfanylethyl)piperazine- 2-carboxamide
4-(4-fluoro-benzyl)-piperazine-2-carboxylic acid(2- mercapto-ethyl)-amide (Synonym)
C14 H20 F N3 O S
CEXXKSSFAKABEN-ZDUSSCGKSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.229
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 47.21 α = 90.00
b = 93.29 β = 90.00
c = 100.33 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-03-07
  • Released Date: 2009-01-20
  • Deposition author(s): Randal, M., Lam, M.B., Romanowski, M.J.

Revision History

  • 2011-07-13
    Type: Advisory, Version format compliance