2ZB2
Human liver glycogen phosphorylase a complexed with glcose and 5-chloro-N-[4-(1,2-dihydroxyethyl)phenyl]-1H-indole-2-carboxamide
- PDB DOI: https://doi.org/10.2210/pdb2ZB2/pdb
- Classification: TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No 
- Deposited: 2007-10-15 Released: 2008-09-02 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.45 Å
- R-Value Free: 0.307 
- R-Value Work: 0.261 
- R-Value Observed: 0.300 
wwPDB Validation   3D Report Full Report
This is version 1.4 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Glycogen phosphorylase, liver form | 849 | Homo sapiens | Mutation(s): 0  Gene Names: PYGL EC: 2.4.1.1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P06737 (Homo sapiens) Explore P06737  Go to UniProtKB:  P06737 | |||||
PHAROS:  P06737 GTEx:  ENSG00000100504  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P06737 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 5 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
A46 Query on A46 | F [auth A], J [auth B] | 5-chloro-N-{4-[(1R)-1,2-dihydroxyethyl]phenyl}-1H-indole-2-carboxamide C17 H15 Cl N2 O3 SHCHFGSUYJUEBR-INIZCTEOSA-N | |||
PLP Query on PLP | E [auth A], I [auth B] | PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N | |||
MES Query on MES | D [auth A], H [auth B] | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID C6 H13 N O4 S SXGZJKUKBWWHRA-UHFFFAOYSA-N | |||
GLC Query on GLC | C [auth A], G [auth B] | alpha-D-glucopyranose C6 H12 O6 WQZGKKKJIJFFOK-DVKNGEFBSA-N | |||
MPD Query on MPD | K [auth B], L [auth B] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.45 Å
- R-Value Free: 0.307 
- R-Value Work: 0.261 
- R-Value Observed: 0.300 
- Space Group: P 31
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 123.819 | α = 90 |
b = 123.819 | β = 90 |
c = 123.538 | γ = 120 |
Software Name | Purpose |
---|---|
CrystalClear | data collection |
CNX | refinement |
CrystalClear | data reduction |
CrystalClear | data scaling |
CNX | phasing |
Entry History 
Deposition Data
- Released Date: 2008-09-02  Deposition Author(s): Katayama, N., Onda, K.
Revision History (Full details and data files)
- Version 1.0: 2008-09-02
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.2: 2017-10-11
Changes: Refinement description - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Data collection, Database references, Derived calculations, Structure summary - Version 1.4: 2023-11-01
Changes: Data collection, Database references, Refinement description, Structure summary