2YSR

Solution structure of the DEP domain from human DEP domain-containing protein 1

• PDB DOI: https://doi.org/10.2210/pdb2YSR/pdb

• Classification: SIGNALING PROTEIN
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2007-04-03 Released: 2007-10-09 
• Deposition Author(s): Zhang, H.P., Hayahsi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the least restraint violations,structures with the lowest energy,target function 

Literature

Solution structure of the DEP domain from human DEP domain-containing protein 1

Zhang, H.P., Hayashi, F., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 12.18 kDa 
• Atom Count: 860 
• Modelled Residue Count: 105 
• Deposited Residue Count: 105 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DEP domain-containing protein 1	A	105	Homo sapiens	Mutation(s): 0  Gene Names: DEPDC1
UniProt & NIH Common Fund Data Resources
Find proteins for Q5TB30 (Homo sapiens) Explore Q5TB30  Go to UniProtKB:  Q5TB30
PHAROS:  Q5TB30 GTEx:  ENSG00000024526

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the least restraint violations,structures with the lowest energy,target function 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-10-09 
Deposition Author(s): Zhang, H.P., Hayahsi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2007-10-09
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2022-03-16
  Changes: Data collection, Database references, Derived calculations