2XJZ

Crystal structure of the LMO2:LDB1-LID complex, C2 crystal form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.228

Literature

Macromolecules
Sequence Display for 2XJZ

Classification: ONCOPROTEIN

Total Structure Weight: 98175.38

Macromolecule Entities
Molecule Chains Length Organism Details
RHOMBOTIN-2 A, B, C, D, E 131 Homo sapiens Fragment: RESIDUES 26-156
Gene Name(s): LMO2 Gene View RBTN2 RBTNL1 RHOM2 TTG2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
LIM DOMAIN-BINDING PROTEIN 1 I, J, K, L, M 36 Homo sapiens Fragment: RESIDUES 334-368
Gene Name(s): LDB1 Gene View CLIM2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B, C, D, E ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

B, D CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.228
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 179.92 α = 90.00
b = 55.53 β = 90.11
c = 114.71 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-07-06
  • Released Date: 2010-07-21
  • Deposition author(s): El Omari, K., Karia, D., Porcher, C., Mancini, E.J.

Revision History

  • 2011-05-19
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance
  • 2017-07-12
    Type: Refinement description