2R7E

Crystal Structure Analysis of Coagulation Factor VIII


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.7 Å
  • R-Value Free: 0.347
  • R-Value Work: 0.279

Literature

Macromolecules
Sequence Display for 2R7E

Classification: BLOOD CLOTTING

Total Structure Weight: 176703.22

Macromolecule Entities
Molecule Chains Length Organism Details
Coagulation factor VIII A 742 Homo sapiens Fragment: residues 19-760
Gene Name(s): F8 Gene View F8C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Coagulation factor VIII B 770 Homo sapiens Fragment: residues 1582-2351
Mutation: F1838S
Gene Name(s): F8 Gene View F8C

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

A, B ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A, B BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CU
Query on CU

A, B COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.7 Å
  • R-Value Free: 0.347
  • R-Value Work: 0.279
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 134.57 α = 90.00
b = 134.57 β = 90.00
c = 359.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-09-07
  • Released Date: 2008-04-15
  • Deposition author(s): Stoddard, B.L., Shen, B.W.

Revision History

  • 2011-07-13
    Type: Non-polymer description, Version format compliance