2P3U

Crystal structure of human factor XA complexed with 3-chloro-N-(4-chloro-2-{[(5-chloropyridin-2-yl)amino]carbonyl}-6-methoxyphenyl)-4-[(1-methyl-1H-imidazol-2-yl)methyl]thiophene-2-carboxamide {Pfizer 320663}


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.62 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.191

Literature

Macromolecules
Sequence Display for 2P3U

Classification: BLOOD CLOTTING

Total Structure Weight: 32566.23

Macromolecule Entities
Molecule Chains Length Organism Details
Coagulation factor X A 52 Homo sapiens EC#: 3.4.21.6 IUBMB
Fragment: EGF-like 2 domain
Gene Name(s): F10 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Coagulation factor X B 233 Homo sapiens EC#: 3.4.21.6 IUBMB
Fragment: CATALYTIC DOMAIN
Gene Name(s): F10 Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
663
Query on 663

B 3-CHLORO-N-(4-CHLORO-2-{[(5-CHLOROPYRIDIN- 2-YL)AMINO]CARBONYL}-6-METHOXYPHENYL)-4-[(1- METHYL-1H-IMIDAZOL-2-YL)METHYL]THIOPHENE- 2-CARBOXAMIDE
C23 H18 Cl3 N5 O3 S
WBFPCLIRIGEEBD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.62 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.191
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 56.01 α = 90.00
b = 71.72 β = 90.00
c = 78.65 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-03-09
  • Released Date: 2007-09-11
  • Deposition author(s): Adler, M., Whitlow, M.

Revision History

  • Version 1_0: 2007-09-11

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance