2OOR

Structure of transhydrogenase (dI.NAD+)2(dIII.H2NADPH)1 asymmetric complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.32 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.247

Literature

Macromolecules
Sequence Display for 2OOR

Classification: OXIDOREDUCTASE

Total Structure Weight: 101565.41

Macromolecule Entities
Molecule Chains Length Organism Details
NAD(P) transhydrogenase subunit alpha part 1 A, B 384 Rhodospirillum rubrum EC#: 1.6.1.2 IUBMB
Gene Name(s): pntAA nntA1 Rru_A2183
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
NAD(P) transhydrogenase subunit beta C 174 Rhodospirillum rubrum EC#: 1.6.1.2 IUBMB
Fragment: residues 262-464
Gene Name(s): pntB nntB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TXP
Query on TXP

C 1,4,5,6-TETRAHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE
C21 H32 N7 O17 P3
MGWIKFWDIJJFDG-ILTSWSAWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAD
Query on NAD

A, B NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
TXP N/A in BindingDB
Kd: 27000 nM  BindingMOAD
N/A in PDBbind
NAD N/A in BindingDB
Kd: 300000 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.32 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.247
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 72.19 α = 90.00
b = 74.45 β = 90.00
c = 204.84 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-01-26
  • Released Date: 2007-03-13
  • Deposition author(s): Bhakta, T., Jackson J.B.

Revision History

  • 2008-05-01
    Type: Version format compliance
  • 2011-07-13
    Type: Non-polymer description, Version format compliance