2NOZ

Structure of Q315F human 8-oxoguanine glycosylase distal crosslink to 8-oxoguanine DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.43 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.238

Literature

Macromolecules
Sequence Display for 2NOZ

Classification: Hydrolase Lyase / DNA

Total Structure Weight: 45853.56


Macromolecule Entities
Molecule Chains Length Organism Details
N-glycosylase/DNA lyase A 325 Homo sapiens EC#: 3.2.2 IUBMB 4.2.99.18 IUBMB
Fragment: 8-oxoguanine DNA glycosylase, DNA-(apurinic or apyrimidinic site) lyase
Mutation: S292C, Q315F
Gene Name(s): OGG1 Gene View MMH MUTM OGH1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*GP*G*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3' B 15 synthetic
5'-D(*G*CP*GP*TP*CP*CP*AP*(G42)P*GP*TP*CP*TP*AP*CP*C)-3' C 15 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

C CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
8OG
Query on 8OG
C DNA LINKING C10 H14 N5 O8 P DG

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.43 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.238
  • Space Group: P 65 2 2

Unit Cell:

Length (Å) Angle (°)
a = 92.39 α = 90.00
b = 92.39 β = 90.00
c = 210.71 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-10-26
  • Released Date: 2006-11-21
  • Deposition author(s): Radom, C.T., Banerjee, A., Verdine, G.L.

Revision History

  • Version 1_0: 2006-11-21

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2017-10-18

    Type: Refinement description