2KRI

Structure of a complex between domain V of beta2-glycoprotein I and the fourth ligand-binding module from LDLR determined with Haddock


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200
  • Conformers Submitted: 1
  • Selection Criteria: Lowest Haddock Score

Literature

Macromolecules
Sequence Display for 2KRI

Classification: PROTEIN BINDING / ENDOCYTOSIS

Total Structure Weight: 14017.92

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-2-glycoprotein 1 A 85 Homo sapiens Fragment: Sushi-like domain
Mutation: V247L
Gene Name(s): APOH Gene View B2G1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Low-density lipoprotein receptor B 40 Homo sapiens Fragment: LDL-receptor class A 4 domain
Gene Name(s): LDLR Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200
  • Conformers Submitted: 1
  • Selection Criteria: lowest haddock score

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-12-18
  • Released Date: 2010-03-31
  • Deposition author(s): Beglova, N.

Revision History

  • 2011-07-13
    Type: Version format compliance