2GAF

Crystal Structure of the Vaccinia Polyadenylate Polymerase Heterodimer (apo form)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.243

Literature

Macromolecules
Sequence Display for 2GAF

Classification: TRANSFERASE

Total Structure Weight: 89446.76

Macromolecule Entities
Molecule Chains Length Organism Details
Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase A 297 Vaccinia virus EC#: 2.1.1.57 IUBMB
Mutation: M1M, M11M, M92M, R140A, K142A, R143A, M163M, M196M, M208M, M219M, M236M, M263M, M266M
Gene Name(s): VAC_DPP10_106 VAC_DPP12_106 VAC_DPP13_106 VAC_DPP15_106 VAC_DPP16_106 VAC_DPP17_106 VAC_DPP19_106 VAC_DPP20_106 VAC_DPP21_106 VAC_DPP9_106 VACAC2_106 VACCL3_106 VACV-DUKE-103 VACV_091 VACV_TT12_115
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Poly(A) polymerase catalytic subunit D 469 Vaccinia virus EC#: 2.7.7.19 IUBMB
Mutation: L36S
Gene Name(s): PAPL VACWR057 E1L
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.243
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 69.08 α = 90.00
b = 91.26 β = 90.00
c = 133.46 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-03-08
  • Released Date: 2006-05-16
  • Deposition author(s): Moure, C.M., Bowman, B.R., Gershon, P.D., Quiocho, F.A.

Revision History

  • 2008-05-01
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance