1RAM

A NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMER


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.324
  • R-Value Work: 0.222

Literature

Macromolecules
Sequence Display for 1RAM

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 74598.59


Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (TRANSCRIPTION FACTOR NF-KB P65) A, B 273 Mus musculus Fragment: P65 SUBUNIT, RESIDUES 19 - 291
Gene Name(s): Rela Nfkb3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*GP*GP*CP*TP*GP*GP*AP*AP*AP*TP*TP*TP*CP*CP*AP*GP*CP*CP*G)-3') C, D 20 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DTT
Query on DTT

A, B 2,3-DIHYDROXY-1,4-DITHIOBUTANE
1,4-DITHIOTHREITOL (Synonym)
C4 H10 O2 S2
VHJLVAABSRFDPM-IMJSIDKUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.324
  • R-Value Work: 0.222
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 65.69 α = 90.00
b = 81.08 β = 90.00
c = 167.56 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-11-22
  • Released Date: 1998-05-27
  • Deposition author(s): Chen, Y.-Q., Ghosh, S., Ghosh, G.

Revision History

  • 2008-05-22
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance