1ZNN

Structure of the synthase subunit of PLP synthase

Structural Biology Knowledgebase: 1ZNN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.159

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1ZNN

Classification: BIOSYNTHETIC PROTEIN

Total Structure Weight: 212014.14

Macromolecule Entities
Molecule Chains Length Organism Details
PLP SYNTHASE A, B, C..., D, E, FA, B, C, D, E, F 325 Geobacillus stearothermophilus EC#: 4.3.3.6 IUBMB
Fragment: SYNTHASE SUBUNIT
Gene Name(s): pdxS GK0011

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MRD
Query on MRD

A, B, C, D, E, F (4R)-2-METHYLPENTANE-2,4-DIOL
C6 H14 O2
SVTBMSDMJJWYQN-RXMQYKEDSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, D, E, F SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.159
  • Space Group: C 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 162.53 α = 90.00
b = 163.92 β = 90.00
c = 186.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-05-11
  • Released Date: 2005-05-24
  • Deposition author(s): Zhu, J., Burgner, J.W., Harms, E., Belitsky, B.R., Smith, J.L.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values