1RF8

Solution structure of the yeast translation initiation factor eIF4E in complex with m7GDP and eIF4GI residues 393 to 490


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50
  • Conformers Submitted: 11
  • Selection Criteria: Structures with the Least Restraint Violations

Literature

Macromolecules
Sequence Display for 1RF8

Classification: BIOSYNTHETIC PROTEIN TRANSLATION

Total Structure Weight: 36815.37

Macromolecule Entities
Molecule Chains Length Organism Details
Eukaryotic translation initiation factor 4E A 213 Saccharomyces cerevisiae Mutation: R120C, R132C, S169C, S200C
Gene Name(s): CDC33 TIF45 YOL139C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Eukaryotic initiation factor 4F subunit p150 B 100 Saccharomyces cerevisiae Fragment: residues 391-488 (SWS:P39935)
Gene Name(s): TIF4631 YGR162W
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
M7G
Query on M7G

A 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE
C11 H19 N5 O11 P2
QQODJOAVWUWVHJ-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MTN
Query on MTN

A S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro- 1H-pyrrol-3-yl)methyl] methanesulfonothioate
MTSL (Synonym)
C10 H18 N O3 S2
MXZPGYFBZHBAQM-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50
  • Conformers Submitted: 11
  • Selection Criteria: structures with the least restraint violations

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-11-07
  • Released Date: 2003-12-23
  • Deposition author(s): Gross, J.D., Moerke, N.J., von der Haar, T., Lugovskoy, A.A., Sachs, A.B., McCarthy, J.E.G., Wagner, G.

Revision History

  • 2008-04-29
    Type: Version format compliance
  • 2011-07-13
    Type: Non-polymer description, Version format compliance