4PG9

MHC Class I in complex with Sendai virus nucleoprotein peptide FAPGNYPAL


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.210

Literature

Macromolecules
Sequence Display for 4PG9

Classification: IMMUNE SYSTEM / PEPTIDE

Total Structure Weight: 48662.55

Macromolecule Entities
Molecule Chains Length Organism Details
H-2 class I histocompatibility antigen, K-B alpha chain A 304 Mus musculus Fragment: heavy chain, UNP residues 22-299
Gene Name(s): H2-K1 H2-K
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Beta-2-microglobulin B 100 Mus musculus Fragment: UNP residues 21-119
Mutation: A85D
Gene Name(s): B2m
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Sendai virus nucleoprotein C 9 Murine respirovirus Fragment: peptide 324-332
Gene Name(s): N NP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B, C GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.210
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 87.72 α = 90.00
b = 136.53 β = 90.00
c = 45.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-05-01
  • Released Date: 2015-01-07
  • Deposition author(s): Celie, P., Joosten, R.P., Perrakis, A., Neefjes, J.

Revision History

  • 2015-01-21
    Type: Database references
  • 2015-02-04
    Type: Database references
  • 2015-02-11
    Type: Database references