3ROL

Murine class I major histocompatibility complex H-2Kb in complex with post-translationally modified LCMV-derived gp34-41 peptide, comprising a nitrotyrosine at position 3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.246

Literature

Macromolecules
Sequence Display for 3ROL

Classification: IMMUNE SYSTEM

Total Structure Weight: 89285.90

Macromolecule Entities
Molecule Chains Length Organism Details
H-2 class I histocompatibility antigen, K-B alpha chain A, C 275 Mus musculus Fragment: unp residues 22-296
Gene Name(s): H2-K1 H2-K
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Beta-2-microglobulin B, D 99 Mus musculus Fragment: unp residues 21-119
Gene Name(s): B2m
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Pre-glycoprotein polyprotein GP complex E, F 8 Lymphocytic choriomeningitis mammarenavirus Fragment: unp residues 34-41
Mutation: C8M
Gene Name(s): GPC GP-C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MPD
Query on MPD

D (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A, C PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

C GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
NIY
Query on NIY
E, F L-PEPTIDE LINKING C9 H10 N2 O5 TYR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.246
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 50.47 α = 90.00
b = 88.50 β = 94.71
c = 119.05 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-04-26
  • Released Date: 2012-04-04
  • Deposition author(s): Madhurantakam, C., Duru, A.D., Leong, C., Sandalova, T., Webb, J.R., Achour, A.

Revision History

No revisions since initial release