3P4O

Crystal Structure of H2-Kb in complex with the mutant NP205-LCMV-V3A epitope YTAKYPNL, an 8-mer modified peptide from the LCMV


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.202

Literature

Macromolecules
Sequence Display for 3P4O

Classification: IMMUNE SYSTEM

Total Structure Weight: 89642.73

Macromolecule Entities
Molecule Chains Length Organism Details
H-2 class I histocompatibility antigen, K-B alpha chain A, D 278 Mus musculus Fragment: Extracellular domain
Gene Name(s): H2-K1 H2-K
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Beta-2-microglobulin B, E 99 Mus musculus Gene Name(s): B2m
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
NP205-LCMV epitope, YTAKYPNL C, F 8 Lymphocytic choriomeningitis mammarenavirus Mutation: V3A
Gene Name(s): NP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACE
Query on ACE

E ACETYL GROUP
C2 H4 O
IKHGUXGNUITLKF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.202
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 66.75 α = 90.00
b = 85.05 β = 111.33
c = 89.18 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-10-06
  • Released Date: 2011-10-12
  • Deposition author(s): Gras, S., Guillonneau, C., Rossjohn, J.

Revision History

No revisions since initial release