5MU8

HUMAN TNF-ALPHA IN COMPLEX WITH JNJ525


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.300
  • R-Value Work: 0.211

Literature

Macromolecules
Sequence Display for 5MU8

Classification: CYTOKINE

Total Structure Weight: 867173.44

Macromolecule Entities
Molecule Chains Length Organism Details
Tumor necrosis factor A, B, C..., D, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u, v, wA, B, C, D, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u, v, w 159 Homo sapiens Fragment: UNP residues 77-233
Gene Name(s): TNF Gene View TNFA TNFSF2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
JNI
Query on JNI

A, C, D, F, H, J, L, M, N, P, Q, R, U, V, X, Z, b, d, f, h, j, l, n, o, p, r, t, v ~{N}4-(phenylmethyl)-~{N}4-[2-[3-(2-piperazin- 1-ylpyrimidin-5-yl)phenyl]phenyl]pyrimidine- 2,4-diamine
C31 H30 N8
FRBABIFCTILEGV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.300
  • R-Value Work: 0.211
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 104.89 α = 97.57
b = 118.35 β = 94.31
c = 186.75 γ = 98.75

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-01-12
  • Released Date: 2017-03-29
  • Deposition author(s): Blevitt, J.M., Hack, M.D., Herman, K.L., Jackson, P.F., Krawczuk, P.J., Lebsack, A.D., Liu, A.X., Mirzadegan, T., Nelen, M.I., Patrick, A.P., Steinbacher, S., Milla, M.E., Lumb, K.J.

Revision History

  • Version 1_0: 2017-03-29

    Type: Initial release

  • Version 1_1: 2017-04-12

    Type: Database references

  • Version 1_2: 2017-05-10

    Type: Database references