4PMW

Structure of mouse Dis3L2 in complex with oligoU RNA substrate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.202

Literature

Macromolecules
Sequence Display for 4PMW

Classification: Hydrolase / RNA

Total Structure Weight: 182772.88


Macromolecule Entities
Molecule Chains Length Organism Details
DIS3-like exonuclease 2 A, B 770 Mus musculus EC#: 3.1.13 IUBMB
Mutation: ΔH148, ΔH149, ΔP150, ΔL151, ΔQ152, ΔQ153, ΔS154, ΔR155, ΔK156, ΔG157, ΔW158, ΔS159, ΔG160, ΔP161, ΔD162, ΔV163, ΔI164, ΔI165, ΔE166, ΔA167, ΔQ168, ΔF169, ΔS194, ΔT195, ΔP196, ΔD197, ΔR198, ΔG199, ΔK200, ΔE201, ΔD202, ΔS203, ΔS204, ΔT205, ΔP206, ΔV207, ΔM208, ΔK209, ΔD210, ΔE211, ΔN212, ΔT213, ΔP214, ΔI215, ΔP216, ΔQ217, ΔD218, ΔT219, ΔR220, ΔG221, D389N
Gene Name(s): Dis3l2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
U-U-U-U-U-U-U-U-U-U-U-U-U-U C, D 14 Unidentified

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.202
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 63.93 α = 90.00
b = 96.07 β = 98.75
c = 157.31 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-05-22
  • Released Date: 2014-07-30
  • Deposition author(s): Faehnle, C.R., Walleshauser, J., Joshua-Tor, L.

Revision History

  • 2014-10-22
    Type: Citation | Details: Citation
  • 2014-08-27
    Type: Citation | Details: Citation