Warning
You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.
MyPDB
Toggle navigation
RCSB PDB
Deposit
Prepare Data
pdb_extract
SF-Tool
Ligand Expo
MAXIT
Validate Data
Validation Server
Information for Journals
Validation Task Forces
Deposit Data
wwPDB OneDep System
Deposition Help & Resources
Deposit FAQ
Tutorials
Annotation Policies
Processing Procedures
PDBx/mmCIF Dictionary
Chemical Component Dictionary
PDB Format Guide
BioSync Beamlines/Facilities
Related Tools
Search
Advanced Search
Drilldown Search
Unreleased & New Entries
Sequences
Ligands
Drugs & Drug Targets
Browse by Annotation
PDB Statistics
Visualize
Visualize3DViewer
PoseView
Protein Feature View
Human Gene View
Pathway View
Analyze
Sequence & Structure Alignment
Protein Symmetry
Structure Quality
Map Genomic Position to Protein
PDB Statistics
Third Party Tools
Download
Coordinates & Experimental Data
Sequences
Ligands
FTP Archive & Services
HTTPS Services
Other Services
RESTful Web Services
Learn
About
Molecule of the Month
Browse all Resources
Educational Resources
Curricula
Guide to PDB Data
News and Events
More
Contact Us
Citing Us
Usage & Privacy
Help Topics
About RCSB PDB
Team Members
Advisory Committee
News
Publications
Careers
139717
Biological Macromolecular Structures Enabling Breakthroughs in Research and Education
Go
Advanced
Search
|
Browse
by Annotations
|
Search
History
|
Previous
Results
Navigation Tabs
Structure Summary
3D View
Annotations
Sequence
Sequence Similarity
Structure Similarity
Experiment
4OO1
Structure of an Rrp6-RNA exosome complex bound to poly(A) RNA
Display Files
FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)
Download Files
FASTA Sequence
PDB File (Text)
PDB File (gz)
PDBx/mmCIF File
PDBx/mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Structure Factor (Text)
Structure Factor (gz)
Biological Assembly (gz) (A+S)
Macromolecule Annotations for the Entities in PDB 4OO1
Protein Family Annotation
Pfam Database Homepage
Chains
Pfam Accession
Pfam Identifier
Pfam Description
Type
Source
Gene Product Annotation
Gene Ontology Consortium Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
Exosome complex component RRP45 (4OO1:A)
Molecular_function
RNA Binding
Protein Binding
Au Rich Element Binding
Exonucleolytic Trimming to Generate Mature 3' End of 5.8s RRNA From Tricistronic RRNA Transcript (ssu RRNA 5.8s RRNA Lsu Rrna)
RRNA Processing
RNA Processing
Nuclear Transcribed MRNA Catabolic Process Exonucleolytic 3' 5'
U1 Snrna 3' End Processing
U4 Snrna 3' End Processing
U5 Snrna 3' End Processing
Exonucleolytic Nuclear Transcribed MRNA Catabolic Process Involved in Deadenylation Dependent Decay
Nuclear Transcribed MRNA Catabolic Process 3' 5' Exonucleolytic Nonsense Mediated Decay
Nuclear Transcribed MRNA Catabolic Process Non Stop Decay
Nonfunctional RRNA Decay
Nuclear MRNA Surveillance
Nuclear Polyadenylation Dependent RRNA Catabolic Process
Nuclear Polyadenylation Dependent TRNA Catabolic Process
Nuclear Polyadenylation Dependent MRNA Catabolic Process
Polyadenylation Dependent Snorna 3' End Processing
Nuclear Exosome (rnase Complex)
Cytoplasmic Exosome (rnase Complex)
Exosome (rnase Complex)
Nucleus
Nucleolus
Cytoplasm
B
Exosome complex component SKI6 (4OO1:B)
Molecular_function
RNA Binding
Protein Binding
Exonucleolytic Trimming to Generate Mature 3' End of 5.8s RRNA From Tricistronic RRNA Transcript (ssu RRNA 5.8s RRNA Lsu Rrna)
RRNA Processing
RRNA Catabolic Process
Nuclear Transcribed MRNA Catabolic Process Exonucleolytic 3' 5'
U1 Snrna 3' End Processing
U4 Snrna 3' End Processing
U5 Snrna 3' End Processing
Nuclear Transcribed MRNA Catabolic Process 3' 5' Exonucleolytic Nonsense Mediated Decay
Nuclear Transcribed MRNA Catabolic Process Non Stop Decay
Nonfunctional RRNA Decay
Nuclear MRNA Surveillance
Nuclear Polyadenylation Dependent TRNA Catabolic Process
Nuclear Polyadenylation Dependent Cut Catabolic Process
Nuclear Polyadenylation Dependent MRNA Catabolic Process
Polyadenylation Dependent Snorna 3' End Processing
Nuclear Exosome (rnase Complex)
Cytoplasmic Exosome (rnase Complex)
Exosome (rnase Complex)
Nucleus
Nucleolus
Cytoplasm
C
Exosome complex component RRP43 (4OO1:C)
Molecular_function
RNA Binding
Protein Binding
Au Rich Element Binding
Exonucleolytic Trimming to Generate Mature 3' End of 5.8s RRNA From Tricistronic RRNA Transcript (ssu RRNA 5.8s RRNA Lsu Rrna)
RRNA Processing
RNA Processing
RNA Catabolic Process
MRNA Catabolic Process
RRNA Metabolic Process
Poly(a)+ MRNA Export From Nucleus
Nuclear Transcribed MRNA Catabolic Process Exonucleolytic 3' 5'
U1 Snrna 3' End Processing
U4 Snrna 3' End Processing
U5 Snrna 3' End Processing
Ncrna 3' End Processing
Exonucleolytic Nuclear Transcribed MRNA Catabolic Process Involved in Deadenylation Dependent Decay
Nuclear Transcribed MRNA Catabolic Process 3' 5' Exonucleolytic Nonsense Mediated Decay
Nuclear Transcribed MRNA Catabolic Process Non Stop Decay
Nonfunctional RRNA Decay
Nuclear MRNA Surveillance
Nuclear Polyadenylation Dependent RRNA Catabolic Process
Nuclear Polyadenylation Dependent TRNA Catabolic Process
Nuclear Polyadenylation Dependent MRNA Catabolic Process
Polyadenylation Dependent Snorna 3' End Processing
Nuclear Exosome (rnase Complex)
Cytoplasmic Exosome (rnase Complex)
Exosome (rnase Complex)
Nucleus
Nucleoplasm
Nucleolus
Cytoplasm
D
Exosome complex component RRP46 (4OO1:D)
Molecular_function
RNA Binding
Protein Binding
Exonucleolytic Trimming to Generate Mature 3' End of 5.8s RRNA From Tricistronic RRNA Transcript (ssu RRNA 5.8s RRNA Lsu Rrna)
RRNA Processing
Nuclear Transcribed MRNA Catabolic Process Exonucleolytic 3' 5'
U4 Snrna 3' End Processing
Ncrna 3' End Processing
Nuclear Transcribed MRNA Catabolic Process 3' 5' Exonucleolytic Nonsense Mediated Decay
Nuclear Transcribed MRNA Catabolic Process Non Stop Decay
Nonfunctional RRNA Decay
Nuclear MRNA Surveillance
Nuclear Polyadenylation Dependent RRNA Catabolic Process
Nuclear Polyadenylation Dependent TRNA Catabolic Process
Nuclear Polyadenylation Dependent MRNA Catabolic Process
Polyadenylation Dependent Snorna 3' End Processing
Nuclear Exosome (rnase Complex)
Cytoplasmic Exosome (rnase Complex)
Exosome (rnase Complex)
Nucleus
Nucleolus
Cytoplasm
E
Exosome complex component RRP42 (4OO1:E)
Molecular_function
RNA Binding
Protein Binding
Au Rich Element Binding
Exonucleolytic Trimming to Generate Mature 3' End of 5.8s RRNA From Tricistronic RRNA Transcript (ssu RRNA 5.8s RRNA Lsu Rrna)
RRNA Processing
RRNA Catabolic Process
Nuclear Transcribed MRNA Catabolic Process Exonucleolytic 3' 5'
U1 Snrna 3' End Processing
U4 Snrna 3' End Processing
U5 Snrna 3' End Processing
Ncrna 3' End Processing
Exonucleolytic Nuclear Transcribed MRNA Catabolic Process Involved in Deadenylation Dependent Decay
Nuclear Transcribed MRNA Catabolic Process 3' 5' Exonucleolytic Nonsense Mediated Decay
Nuclear Transcribed MRNA Catabolic Process Non Stop Decay
Nonfunctional RRNA Decay
Nuclear MRNA Surveillance
Nuclear Polyadenylation Dependent RRNA Catabolic Process
Nuclear Polyadenylation Dependent TRNA Catabolic Process
Nuclear Polyadenylation Dependent MRNA Catabolic Process
Polyadenylation Dependent Snorna 3' End Processing
Nuclear Exosome (rnase Complex)
Cytoplasmic Exosome (rnase Complex)
Exosome (rnase Complex)
Nucleus
Nucleolus
Cytoplasm
F
Exosome complex component MTR3 (4OO1:F)
Molecular_function
RNA Binding
Protein Binding
Exonucleolytic Trimming to Generate Mature 3' End of 5.8s RRNA From Tricistronic RRNA Transcript (ssu RRNA 5.8s RRNA Lsu Rrna)
RRNA Processing
Nuclear Transcribed MRNA Catabolic Process Exonucleolytic 3' 5'
U4 Snrna 3' End Processing
Nuclear Transcribed MRNA Catabolic Process 3' 5' Exonucleolytic Nonsense Mediated Decay
Nuclear Transcribed MRNA Catabolic Process Non Stop Decay
Nonfunctional RRNA Decay
Nuclear MRNA Surveillance
Nuclear Polyadenylation Dependent RRNA Catabolic Process
Nuclear Polyadenylation Dependent TRNA Catabolic Process
Nuclear Polyadenylation Dependent Cut Catabolic Process
Nuclear Polyadenylation Dependent MRNA Catabolic Process
Polyadenylation Dependent Snorna 3' End Processing
Nuclear Exosome (rnase Complex)
Cytoplasmic Exosome (rnase Complex)
Exosome (rnase Complex)
Nucleus
Nucleolus
Cytoplasm
G
Exosome complex component RRP40 (4OO1:G)
RNA Binding
Protein Binding
Manganese Ion Binding
Exonucleolytic Trimming to Generate Mature 3' End of 5.8s RRNA From Tricistronic RRNA Transcript (ssu RRNA 5.8s RRNA Lsu Rrna)
RRNA Processing
Nuclear Transcribed MRNA Catabolic Process Exonucleolytic 3' 5'
U4 Snrna 3' End Processing
Ncrna 3' End Processing
Exonucleolytic Nuclear Transcribed MRNA Catabolic Process Involved in Deadenylation Dependent Decay
Nuclear Transcribed MRNA Catabolic Process 3' 5' Exonucleolytic Nonsense Mediated Decay
Nuclear Transcribed MRNA Catabolic Process Non Stop Decay
Nonfunctional RRNA Decay
Cut Catabolic Process
Nuclear Polyadenylation Dependent RRNA Catabolic Process
Nuclear Polyadenylation Dependent TRNA Catabolic Process
Nuclear Polyadenylation Dependent MRNA Catabolic Process
Nuclear Retention of Pre MRNA with Aberrant 3' Ends at the Site of Transcription
Polyadenylation Dependent Snorna 3' End Processing
Nuclear Exosome (rnase Complex)
Cytoplasmic Exosome (rnase Complex)
Exosome (rnase Complex)
Nucleus
Nucleolus
Cytoplasm
H
Exosome complex component RRP4 (4OO1:H)
Molecular_function
RNA Binding
Protein Binding
Exonucleolytic Trimming to Generate Mature 3' End of 5.8s RRNA From Tricistronic RRNA Transcript (ssu RRNA 5.8s RRNA Lsu Rrna)
RRNA Processing
Nuclear Transcribed MRNA Catabolic Process Exonucleolytic 3' 5'
U4 Snrna 3' End Processing
Exonucleolytic Nuclear Transcribed MRNA Catabolic Process Involved in Deadenylation Dependent Decay
Nuclear Transcribed MRNA Catabolic Process 3' 5' Exonucleolytic Nonsense Mediated Decay
Nuclear Transcribed MRNA Catabolic Process Non Stop Decay
Nonfunctional RRNA Decay
Cut Catabolic Process
Nuclear Polyadenylation Dependent RRNA Catabolic Process
Nuclear Polyadenylation Dependent TRNA Catabolic Process
Nuclear Polyadenylation Dependent MRNA Catabolic Process
Nuclear Retention of Pre MRNA with Aberrant 3' Ends at the Site of Transcription
Polyadenylation Dependent Snorna 3' End Processing
Nuclear Exosome (rnase Complex)
Cytoplasmic Exosome (rnase Complex)
Exosome (rnase Complex)
Nucleus
Nucleolus
Cytoplasm
I
Exosome complex component CSL4 (4OO1:I)
Molecular_function
RNA Binding
Protein Binding
Exonucleolytic Trimming to Generate Mature 3' End of 5.8s RRNA From Tricistronic RRNA Transcript (ssu RRNA 5.8s RRNA Lsu Rrna)
RRNA Processing
Poly(a)+ MRNA Export From Nucleus
Nuclear Transcribed MRNA Catabolic Process Exonucleolytic 3' 5'
Ncrna 3' End Processing
Nuclear Transcribed MRNA Catabolic Process 3' 5' Exonucleolytic Nonsense Mediated Decay
Nuclear Transcribed MRNA Catabolic Process Non Stop Decay
Nonfunctional RRNA Decay
Nuclear Polyadenylation Dependent RRNA Catabolic Process
Nuclear Polyadenylation Dependent TRNA Catabolic Process
Nuclear Polyadenylation Dependent MRNA Catabolic Process
Polyadenylation Dependent Snorna 3' End Processing
Nuclear Exosome (rnase Complex)
Cytoplasmic Exosome (rnase Complex)
Exosome (rnase Complex)
Nucleus
Nucleolus
Cytoplasm
J
Exosome complex exonuclease RRP6 (4OO1:J)
Nucleotide Binding
Nucleic Acid Binding
Catalytic Activity
3' 5' Exonuclease Activity
Nucleobase Containing Compound Metabolic Process
Cellular Metabolic Process
Intracellular
S
POLY A RNA (4OO1:S)
none
none
none
Protein Modification Annotation
Type
PDB Residue Nr.
Description
