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Structure Summary
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Sequence
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4OO1
Structure of an Rrp6-RNA exosome complex bound to poly(A) RNA
Display Files
FASTA Sequence
PDB File
PDB File (Header)
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mmCIF File (Header)
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PDBML/XML File (Header)
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FASTA Sequence
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PDB File (gz)
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PDBx/mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Structure Factor (Text)
Structure Factor (gz)
Biological Assembly (gz) (A+S)
Macromolecule Annotations for the Entities in PDB 4OO1
Protein Family Annotation
Pfam Database Homepage
Chains
Pfam Accession
Pfam Identifier
Pfam Description
Type
Source
Gene Product Annotation
Gene Ontology Consortium Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
Exosome complex component RRP45 (4OO1:A)
Molecular_function
RNA Binding
Protein Binding
Au Rich Element Binding
Identical Protein Binding
Exonucleolytic Trimming to Generate Mature 3' End of 5.8s RRNA From Tricistronic RRNA Transcript (ssu RRNA 5.8s RRNA Lsu Rrna)
RRNA Processing
RNA Processing
Nuclear Transcribed MRNA Catabolic Process Exonucleolytic 3' 5'
U1 Snrna 3' End Processing
U4 Snrna 3' End Processing
U5 Snrna 3' End Processing
Exonucleolytic Nuclear Transcribed MRNA Catabolic Process Involved in Deadenylation Dependent Decay
Nuclear Transcribed MRNA Catabolic Process 3' 5' Exonucleolytic Nonsense Mediated Decay
Nuclear Transcribed MRNA Catabolic Process Non Stop Decay
Nonfunctional RRNA Decay
Nuclear MRNA Surveillance
Nuclear Polyadenylation Dependent RRNA Catabolic Process
Nuclear Polyadenylation Dependent TRNA Catabolic Process
Nuclear Polyadenylation Dependent MRNA Catabolic Process
Polyadenylation Dependent Snorna 3' End Processing
Nuclear Exosome (rnase Complex)
Cytoplasmic Exosome (rnase Complex)
Exosome (rnase Complex)
Nucleus
Nucleolus
Cytoplasm
B
Exosome complex component SKI6 (4OO1:B)
Molecular_function
RNA Binding
Protein Binding
Exonucleolytic Trimming to Generate Mature 3' End of 5.8s RRNA From Tricistronic RRNA Transcript (ssu RRNA 5.8s RRNA Lsu Rrna)
RRNA Processing
RRNA Catabolic Process
Nuclear Transcribed MRNA Catabolic Process Exonucleolytic 3' 5'
U1 Snrna 3' End Processing
U4 Snrna 3' End Processing
U5 Snrna 3' End Processing
Nuclear Transcribed MRNA Catabolic Process 3' 5' Exonucleolytic Nonsense Mediated Decay
Nuclear Transcribed MRNA Catabolic Process Non Stop Decay
Nonfunctional RRNA Decay
Nuclear MRNA Surveillance
Nuclear Polyadenylation Dependent TRNA Catabolic Process
Nuclear Polyadenylation Dependent Cut Catabolic Process
Nuclear Polyadenylation Dependent MRNA Catabolic Process
Polyadenylation Dependent Snorna 3' End Processing
Nuclear Exosome (rnase Complex)
Cytoplasmic Exosome (rnase Complex)
Exosome (rnase Complex)
Nucleus
Nucleolus
Cytoplasm
Cytosol
C
Exosome complex component RRP43 (4OO1:C)
Molecular_function
RNA Binding
Protein Binding
Au Rich Element Binding
Exonucleolytic Trimming to Generate Mature 3' End of 5.8s RRNA From Tricistronic RRNA Transcript (ssu RRNA 5.8s RRNA Lsu Rrna)
RRNA Processing
MRNA Catabolic Process
RRNA Metabolic Process
Poly(a)+ MRNA Export From Nucleus
Nuclear Transcribed MRNA Catabolic Process Exonucleolytic 3' 5'
U1 Snrna 3' End Processing
U4 Snrna 3' End Processing
U5 Snrna 3' End Processing
Ncrna 3' End Processing
Exonucleolytic Nuclear Transcribed MRNA Catabolic Process Involved in Deadenylation Dependent Decay
Nuclear Transcribed MRNA Catabolic Process 3' 5' Exonucleolytic Nonsense Mediated Decay
Nuclear Transcribed MRNA Catabolic Process Non Stop Decay
Nonfunctional RRNA Decay
Nuclear MRNA Surveillance
Nuclear Polyadenylation Dependent RRNA Catabolic Process
Nuclear Polyadenylation Dependent TRNA Catabolic Process
Nuclear Polyadenylation Dependent MRNA Catabolic Process
Polyadenylation Dependent Snorna 3' End Processing
Nuclear Exosome (rnase Complex)
Cytoplasmic Exosome (rnase Complex)
Exosome (rnase Complex)
Nucleus
Nucleoplasm
Nucleolus
Cytoplasm
D
Exosome complex component RRP46 (4OO1:D)
Molecular_function
RNA Binding
Protein Binding
Identical Protein Binding
Exonucleolytic Trimming to Generate Mature 3' End of 5.8s RRNA From Tricistronic RRNA Transcript (ssu RRNA 5.8s RRNA Lsu Rrna)
RRNA Processing
Nuclear Transcribed MRNA Catabolic Process Exonucleolytic 3' 5'
U4 Snrna 3' End Processing
Ncrna 3' End Processing
Nuclear Transcribed MRNA Catabolic Process 3' 5' Exonucleolytic Nonsense Mediated Decay
Nuclear Transcribed MRNA Catabolic Process Non Stop Decay
Nonfunctional RRNA Decay
Nuclear MRNA Surveillance
Nuclear Polyadenylation Dependent RRNA Catabolic Process
Nuclear Polyadenylation Dependent TRNA Catabolic Process
Nuclear Polyadenylation Dependent MRNA Catabolic Process
Polyadenylation Dependent Snorna 3' End Processing
Nuclear Exosome (rnase Complex)
Cytoplasmic Exosome (rnase Complex)
Exosome (rnase Complex)
Nucleus
Nucleolus
Cytoplasm
E
Exosome complex component RRP42 (4OO1:E)
Molecular_function
RNA Binding
Protein Binding
Au Rich Element Binding
Exonucleolytic Trimming to Generate Mature 3' End of 5.8s RRNA From Tricistronic RRNA Transcript (ssu RRNA 5.8s RRNA Lsu Rrna)
RRNA Processing
RRNA Catabolic Process
Nuclear Transcribed MRNA Catabolic Process Exonucleolytic 3' 5'
U1 Snrna 3' End Processing
U4 Snrna 3' End Processing
U5 Snrna 3' End Processing
Ncrna 3' End Processing
Exonucleolytic Nuclear Transcribed MRNA Catabolic Process Involved in Deadenylation Dependent Decay
Nuclear Transcribed MRNA Catabolic Process 3' 5' Exonucleolytic Nonsense Mediated Decay
Nuclear Transcribed MRNA Catabolic Process Non Stop Decay
Nonfunctional RRNA Decay
Nuclear MRNA Surveillance
Nuclear Polyadenylation Dependent RRNA Catabolic Process
Nuclear Polyadenylation Dependent TRNA Catabolic Process
Nuclear Polyadenylation Dependent MRNA Catabolic Process
Polyadenylation Dependent Snorna 3' End Processing
Nuclear Exosome (rnase Complex)
Cytoplasmic Exosome (rnase Complex)
Exosome (rnase Complex)
Nucleus
Nucleolus
Cytoplasm
F
Exosome complex component MTR3 (4OO1:F)
Molecular_function
RNA Binding
Protein Binding
Exonucleolytic Trimming to Generate Mature 3' End of 5.8s RRNA From Tricistronic RRNA Transcript (ssu RRNA 5.8s RRNA Lsu Rrna)
RRNA Processing
Nuclear Transcribed MRNA Catabolic Process Exonucleolytic 3' 5'
U4 Snrna 3' End Processing
Nuclear Transcribed MRNA Catabolic Process 3' 5' Exonucleolytic Nonsense Mediated Decay
Nuclear Transcribed MRNA Catabolic Process Non Stop Decay
Nonfunctional RRNA Decay
Nuclear MRNA Surveillance
Nuclear Polyadenylation Dependent RRNA Catabolic Process
Nuclear Polyadenylation Dependent TRNA Catabolic Process
Nuclear Polyadenylation Dependent Cut Catabolic Process
Nuclear Polyadenylation Dependent MRNA Catabolic Process
Polyadenylation Dependent Snorna 3' End Processing
Nuclear Exosome (rnase Complex)
Cytoplasmic Exosome (rnase Complex)
Exosome (rnase Complex)
Nucleus
Nucleolus
Cytoplasm
G
Exosome complex component RRP40 (4OO1:G)
RNA Binding
Protein Binding
Manganese Ion Binding
Exonucleolytic Trimming to Generate Mature 3' End of 5.8s RRNA From Tricistronic RRNA Transcript (ssu RRNA 5.8s RRNA Lsu Rrna)
RRNA Processing
Nuclear Transcribed MRNA Catabolic Process Exonucleolytic 3' 5'
U4 Snrna 3' End Processing
Ncrna 3' End Processing
Exonucleolytic Nuclear Transcribed MRNA Catabolic Process Involved in Deadenylation Dependent Decay
Nuclear Transcribed MRNA Catabolic Process 3' 5' Exonucleolytic Nonsense Mediated Decay
Nuclear Transcribed MRNA Catabolic Process Non Stop Decay
Nonfunctional RRNA Decay
Cut Catabolic Process
Nuclear Polyadenylation Dependent RRNA Catabolic Process
Nuclear Polyadenylation Dependent TRNA Catabolic Process
Nuclear Polyadenylation Dependent MRNA Catabolic Process
Nuclear Retention of Pre MRNA with Aberrant 3' Ends at the Site of Transcription
Polyadenylation Dependent Snorna 3' End Processing
Nuclear Exosome (rnase Complex)
Cytoplasmic Exosome (rnase Complex)
Exosome (rnase Complex)
Nucleus
Nucleolus
Cytoplasm
H
Exosome complex component RRP4 (4OO1:H)
Molecular_function
RNA Binding
Protein Binding
Exonucleolytic Trimming to Generate Mature 3' End of 5.8s RRNA From Tricistronic RRNA Transcript (ssu RRNA 5.8s RRNA Lsu Rrna)
RRNA Processing
Nuclear Transcribed MRNA Catabolic Process Exonucleolytic 3' 5'
U4 Snrna 3' End Processing
Exonucleolytic Nuclear Transcribed MRNA Catabolic Process Involved in Deadenylation Dependent Decay
Nuclear Transcribed MRNA Catabolic Process 3' 5' Exonucleolytic Nonsense Mediated Decay
Nuclear Transcribed MRNA Catabolic Process Non Stop Decay
Nonfunctional RRNA Decay
Cut Catabolic Process
Nuclear Polyadenylation Dependent RRNA Catabolic Process
Nuclear Polyadenylation Dependent TRNA Catabolic Process
Nuclear Polyadenylation Dependent MRNA Catabolic Process
Nuclear Retention of Pre MRNA with Aberrant 3' Ends at the Site of Transcription
Polyadenylation Dependent Snorna 3' End Processing
Nuclear Exosome (rnase Complex)
Cytoplasmic Exosome (rnase Complex)
Exosome (rnase Complex)
Nucleus
Nucleolus
Cytoplasm
I
Exosome complex component CSL4 (4OO1:I)
Molecular_function
RNA Binding
Protein Binding
Exonucleolytic Trimming to Generate Mature 3' End of 5.8s RRNA From Tricistronic RRNA Transcript (ssu RRNA 5.8s RRNA Lsu Rrna)
RRNA Processing
Poly(a)+ MRNA Export From Nucleus
Nuclear Transcribed MRNA Catabolic Process Exonucleolytic 3' 5'
Ncrna 3' End Processing
Nuclear Transcribed MRNA Catabolic Process 3' 5' Exonucleolytic Nonsense Mediated Decay
Nuclear Transcribed MRNA Catabolic Process Non Stop Decay
Nonfunctional RRNA Decay
Nuclear Polyadenylation Dependent RRNA Catabolic Process
Nuclear Polyadenylation Dependent TRNA Catabolic Process
Nuclear Polyadenylation Dependent MRNA Catabolic Process
Polyadenylation Dependent Snorna 3' End Processing
Nuclear Exosome (rnase Complex)
Cytoplasmic Exosome (rnase Complex)
Exosome (rnase Complex)
Nucleus
Nucleolus
Cytoplasm
J
Exosome complex exonuclease RRP6 (4OO1:J)
Nucleotide Binding
Nucleic Acid Binding
Catalytic Activity
3' 5' Exonuclease Activity
Nucleobase Containing Compound Metabolic Process
Cellular Metabolic Process
Intracellular
S
POLY A RNA (4OO1:S)
none
none
none
Protein Modification Annotation
Type
PDB Residue Nr.
Description
