Macromolecule Annotations for the Entities in PDB 4KZZ

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
K PF03501 S10_plectin Plectin/S10 domain Domain This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. PFAM PF03501
H PF01251 Ribosomal_S7e Ribosomal protein S7e Family
N PF08069 Ribosomal_S13_N Ribosomal S13/S15 N-terminal domain Domain This domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1]. PFAM PF08069
V PF01249 Ribosomal_S21e Ribosomal protein S21e Family
N PF00312 Ribosomal_S15 Ribosomal protein S15 Domain PFAM PF00312
A PF00318 Ribosomal_S2 Ribosomal protein S2 Family
E PF00467 KOW KOW motif Family
I PF01201 Ribosomal_S8e Ribosomal protein S8e Family
n PF01176 eIF-1a Translation initiation factor 1A / IF-1 Domain This family includes both the eukaryotic translation factor eIF-1A and the bacterial translation initiation factor IF-1. PFAM PF01176
F PF00177 Ribosomal_S7 Ribosomal protein S7p/S5e Domain This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. PFAM PF00177
O PF00411 Ribosomal_S11 Ribosomal protein S11 Family
f PF01599 Ribosomal_S27 Ribosomal protein S27a Domain This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2]. PFAM PF01599
g PF00400 WD40 WD domain, G-beta repeat Repeat
R PF00833 Ribosomal_S17e Ribosomal S17 Family
U PF00338 Ribosomal_S10 Ribosomal protein S10p/S20e Family
D PF00189 Ribosomal_S3_C Ribosomal protein S3, C-terminal domain Domain This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. PFAM PF00189
J PF01479 S4 S4 domain Domain The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA. PFAM PF01479
e PF04758 Ribosomal_S30 Ribosomal protein S30 Family
J PF00163 Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain Family
C PF03719 Ribosomal_S5_C Ribosomal protein S5, C-terminal domain Domain PFAM PF03719
E PF00900 Ribosomal_S4e Ribosomal family S4e Family
g PF00400 WD40 WD domain, G-beta repeat Repeat
B PF01015 Ribosomal_S3Ae Ribosomal S3Ae family Family
C PF00333 Ribosomal_S5 Ribosomal protein S5, N-terminal domain Domain PFAM PF00333
G PF01092 Ribosomal_S6e Ribosomal protein S6e Family
T PF01090 Ribosomal_S19e Ribosomal protein S19e Family
E PF08071 RS4NT RS4NT (NUC023) domain Domain This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. PFAM PF08071
g PF00400 WD40 WD domain, G-beta repeat Repeat
b PF01667 Ribosomal_S27e Ribosomal protein S27 Family
Y PF01282 Ribosomal_S24e Ribosomal protein S24e Family
g PF00400 WD40 WD domain, G-beta repeat Repeat
g PF00400 WD40 WD domain, G-beta repeat Repeat
M PF01248 Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Domain This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1]. PFAM PF01248
W PF00410 Ribosomal_S8 Ribosomal protein S8 Domain PFAM PF00410
A PF00318 Ribosomal_S2 Ribosomal protein S2 Family
c PF01200 Ribosomal_S28e Ribosomal protein S28e Family
Q PF00380 Ribosomal_S9 Ribosomal protein S9/S16 Family
d PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e Family
a PF01283 Ribosomal_S26e Ribosomal protein S26e Family
S PF00416 Ribosomal_S13 Ribosomal protein S13/S18 Family
g PF00400 WD40 WD domain, G-beta repeat Repeat
D PF07650 KH_2 KH domain Domain PFAM PF07650
X PF00164 Ribosom_S12_S23 Ribosomal protein S12/S23 Family
Z PF03297 Ribosomal_S25 S25 ribosomal protein Family
P PF00203 Ribosomal_S19 Ribosomal protein S19 Domain PFAM PF00203
L PF00366 Ribosomal_S17 Ribosomal protein S17 Domain PFAM PF00366

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A 40S Ribosomal Protein SA (4KZZ:A)
B 40S Ribosomal Protein S3A (4KZZ:B)
C 40S Ribosomal Protein S2 (4KZZ:C)
D 40S Ribosomal Protein S3 (4KZZ:D)
E 40S Ribosomal Protein S4X (4KZZ:E)
F 40S Ribosomal Protein S5 (4KZZ:F)
G 40S Ribosomal Protein S6 (4KZZ:G)
H 40S Ribosomal Protein S7 (4KZZ:H)
I 40S Ribosomal Protein S8 (4KZZ:I)
J 40S Ribosomal Protein S9 (4KZZ:J)
K 40S Ribosomal Protein S10 (4KZZ:K)
  • none
  • none
  • none
L 40S Ribosomal Protein S11 (4KZZ:L)
M 40S Ribosomal Protein S12 (4KZZ:M)
N 40S Ribosomal Protein S13 (4KZZ:N)
O 40S Ribosomal Protein S14 (4KZZ:O)
P 40S Ribosomal Protein S15 (4KZZ:P)
Q 40S Ribosomal Protein S16 (4KZZ:Q)
R 40S Ribosomal Protein S17 (4KZZ:R)
S 40S Ribosomal Protein S18 (4KZZ:S)
T 40S Ribosomal Protein S19 (4KZZ:T)
U 40S Ribosomal Protein S20 (4KZZ:U)
V 40S Ribosomal Protein S21 (4KZZ:V)
W 40S Ribosomal Protein S15A (4KZZ:W)
X 40S Ribosomal Protein S23 (4KZZ:X)
Y 40S Ribosomal Protein S24 (4KZZ:Y)
Z 40S Ribosomal Protein S25 (4KZZ:Z)
  • none
  • none
  • none
a 40S Ribosomal Protein S26 (4KZZ:a)
  • none
  • none
  • none
b 40S Ribosomal Protein S27 (4KZZ:b)
  • none
  • none
  • none
c 40S Ribosomal Protein S28 (4KZZ:c)
  • none
  • none
  • none
d 40S Ribosomal Protein S29 (4KZZ:d)
  • none
  • none
  • none
e 40S Ribosomal Protein S30 (4KZZ:e)
  • none
  • none
  • none
f 40S Ribosomal Protein S27A (4KZZ:f)
  • none
  • none
  • none
g 40S Ribosomal Protein RACK1 (4KZZ:g)
  • none
  • none
  • none
i 18S Ribosomal RNA (4KZZ:i)
  • none
  • none
  • none
j initiator Met-RNA-i (4KZZ:j)
  • none
  • none
  • none
k mRNA (4KZZ:k)
  • none
  • none
  • none
n human initiation factor eIF1A (4KZZ:n)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description