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Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A.
Annotation data related to this entry.
4KZY
  •   Protein Family Annotation: Pfam Classification   Hide
    Chain Pfam Accession Pfam Family Identifier Pfam Description Type Comment
    N PF00312   Ribosomal_S15 Ribosomal protein S15 Domain Source: Pfam  
    E PF08071   RS4NT RS4NT (NUC023) domain Domain This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. Source: Pfam  
    U PF00338   Ribosomal_S10 Ribosomal protein S10p/S20e Family
    J PF00163   Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain Family
    g PF00400   WD40 WD domain, G-beta repeat Repeat
    R PF00833   Ribosomal_S17e Ribosomal S17 Family
    K PF03501   S10_plectin Plectin/S10 domain Domain This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. Source: Pfam  
    l PF01253   SUI1 Translation initiation factor SUI1 Domain Source: Pfam  
    S PF00416   Ribosomal_S13 Ribosomal protein S13/S18 Family
    c PF01200   Ribosomal_S28e Ribosomal protein S28e Family
    E PF00900   Ribosomal_S4e Ribosomal family S4e Family
    L PF00366   Ribosomal_S17 Ribosomal protein S17 Domain Source: Pfam  
    H PF01251   Ribosomal_S7e Ribosomal protein S7e Family
    G PF01092   Ribosomal_S6e Ribosomal protein S6e Family
    g PF00400   WD40 WD domain, G-beta repeat Repeat
    D PF07650   KH_2 KH domain Domain Source: Pfam  
    e PF04758   Ribosomal_S30 Ribosomal protein S30 Family
    a PF01283   Ribosomal_S26e Ribosomal protein S26e Family
    V PF01249   Ribosomal_S21e Ribosomal protein S21e Family
    Q PF00380   Ribosomal_S9 Ribosomal protein S9/S16 Family
    P PF00203   Ribosomal_S19 Ribosomal protein S19 Domain Source: Pfam  
    B PF01015   Ribosomal_S3Ae Ribosomal S3Ae family Family
    X PF00164   Ribosom_S12_S23 Ribosomal protein S12/S23 Family
    g PF00400   WD40 WD domain, G-beta repeat Repeat
    d PF00253   Ribosomal_S14 Ribosomal protein S14p/S29e Family
    Y PF01282   Ribosomal_S24e Ribosomal protein S24e Family
    D PF00189   Ribosomal_S3_C Ribosomal protein S3, C-terminal domain Domain This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Source: Pfam  
    f PF01599   Ribosomal_S27 Ribosomal protein S27a Domain This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2]. Source: Pfam  
    A PF00318   Ribosomal_S2 Ribosomal protein S2 Family
    b PF01667   Ribosomal_S27e Ribosomal protein S27 Family
    T PF01090   Ribosomal_S19e Ribosomal protein S19e Family
    M PF01248   Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Domain This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1]. Source: Pfam  
    g PF00400   WD40 WD domain, G-beta repeat Repeat
    J PF01479   S4 S4 domain Domain The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA. Source: Pfam  
    F PF00177   Ribosomal_S7 Ribosomal protein S7p/S5e Domain This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Source: Pfam  
    n PF01176   eIF-1a Translation initiation factor 1A / IF-1 Domain This family includes both the eukaryotic translation factor eIF-1A and the bacterial translation initiation factor IF-1. Source: Pfam  
    g PF00400   WD40 WD domain, G-beta repeat Repeat
    I PF01201   Ribosomal_S8e Ribosomal protein S8e Family
    g PF00400   WD40 WD domain, G-beta repeat Repeat
    Z PF03297   Ribosomal_S25 S25 ribosomal protein Family
    N PF08069   Ribosomal_S13_N Ribosomal S13/S15 N-terminal domain Domain This domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1]. Source: Pfam  
    g PF00400   WD40 WD domain, G-beta repeat Repeat
    W PF00410   Ribosomal_S8 Ribosomal protein S8 Domain Source: Pfam  
    E PF00467   KOW KOW motif Family
    O PF00411   Ribosomal_S11 Ribosomal protein S11 Family
    C PF00333   Ribosomal_S5 Ribosomal protein S5, N-terminal domain Domain Source: Pfam  
    C PF03719   Ribosomal_S5_C Ribosomal protein S5, C-terminal domain Domain Source: Pfam  
     
  •   Gene Product Annotation: GO Terms   Hide
    Polymer Molecular Function Biological Process Cellular Component
    40S Ribosomal Protein SA (4KZY:A)
    • none
    • none
    40S Ribosomal Protein S3A (4KZY:B)
    40S Ribosomal Protein S2 (4KZY:C)
    • none
    • none
    • none
    40S Ribosomal Protein S3 (4KZY:D)
    • none
    • none
    • none
    40S Ribosomal Protein S4X (4KZY:E)
    • none
    • none
    • none
    40S Ribosomal Protein S5 (4KZY:F)
    • none
    • none
    40S Ribosomal Protein S6 (4KZY:G)
    • none
    • none
    40S Ribosomal Protein S7 (4KZY:H)
    • none
    • none
    • none
    40S Ribosomal Protein S8 (4KZY:I)
    • none
    • none
    40S Ribosomal Protein S9 (4KZY:J)
    • none
    • none
    40S Ribosomal Protein S10 (4KZY:K)
    • none
    • none
    • none
    40S Ribosomal Protein S11 (4KZY:L)
    40S Ribosomal Protein S12 (4KZY:M)
    • none
    • none
    40S Ribosomal Protein S13 (4KZY:N)
    • none
    40S Ribosomal Protein S14 (4KZY:O)
    • none
    • none
    40S Ribosomal Protein S15 (4KZY:P)
    • none
    • none
    40S Ribosomal Protein S16 (4KZY:Q)
    • none
    • none
    • none
    40S Ribosomal Protein S17 (4KZY:R)
    • none
    • none
    • none
    40S Ribosomal Protein S18 (4KZY:S)
    • none
    • none
    40S Ribosomal Protein S19 (4KZY:T)
    • none
    • none
    • none
    40S Ribosomal Protein S20 (4KZY:U)
    • none
    • none
    • none
    40S Ribosomal Protein S21 (4KZY:V)
    • none
    • none
    40S Ribosomal Protein S15A (4KZY:W)
    • none
    • none
    40S Ribosomal Protein S23 (4KZY:X)
    • none
    • none
    40S Ribosomal Protein S24 (4KZY:Y)
    • none
    • none
    40S Ribosomal Protein S25 (4KZY:Z)
    • none
    • none
    • none
    40S Ribosomal Protein S26 (4KZY:a)
    • none
    • none
    • none
    40S Ribosomal Protein S27 (4KZY:b)
    • none
    • none
    • none
    40S Ribosomal Protein S28 (4KZY:c)
    • none
    • none
    • none
    40S Ribosomal Protein S29 (4KZY:d)
    • none
    • none
    • none
    40S Ribosomal Protein S30 (4KZY:e)
    • none
    • none
    • none
    40S Ribosomal Protein S27A (4KZY:f)
    • none
    • none
    • none
    40S Ribosomal Protein RACK1 (4KZY:g)
    • none
    • none
    • none
    18S Ribosomal RNA (4KZY:i)
    • none
    • none
    • none
    human initiation factor eIF1 (4KZY:l)
    • none
    • none
    • none
    human initiation factor eIF1A (4KZY:n)
    • none
    • none
    • none
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Annotations in orange boxes have been gathered from external resources.