Macromolecule Annotations for the Entities in PDB 4KZX

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
M PF01248 Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Domain This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1]. PFAM PF01248
K PF03501 S10_plectin Plectin/S10 domain Domain This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. PFAM PF03501
c PF01200 Ribosomal_S28e Ribosomal protein S28e Family
E PF00900 Ribosomal_S4e Ribosomal family S4e Family
F PF00177 Ribosomal_S7 Ribosomal protein S7p/S5e Domain This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. PFAM PF00177
g PF00400 WD40 WD domain, G-beta repeat Repeat
H PF01251 Ribosomal_S7e Ribosomal protein S7e Family
g PF00400 WD40 WD domain, G-beta repeat Repeat
E PF08071 RS4NT RS4NT (NUC023) domain Domain This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. PFAM PF08071
U PF00338 Ribosomal_S10 Ribosomal protein S10p/S20e Family
T PF01090 Ribosomal_S19e Ribosomal protein S19e Family
N PF00312 Ribosomal_S15 Ribosomal protein S15 Domain PFAM PF00312
B PF01015 Ribosomal_S3Ae Ribosomal S3Ae family Family
N PF08069 Ribosomal_S13_N Ribosomal S13/S15 N-terminal domain Domain This domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1]. PFAM PF08069
g PF00400 WD40 WD domain, G-beta repeat Repeat
V PF01249 Ribosomal_S21e Ribosomal protein S21e Family
d PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e Family
C PF03719 Ribosomal_S5_C Ribosomal protein S5, C-terminal domain Domain PFAM PF03719
b PF01667 Ribosomal_S27e Ribosomal protein S27 Family
D PF07650 KH_2 KH domain Domain PFAM PF07650
g PF00400 WD40 WD domain, G-beta repeat Repeat
O PF00411 Ribosomal_S11 Ribosomal protein S11 Family
C PF00333 Ribosomal_S5 Ribosomal protein S5, N-terminal domain Domain PFAM PF00333
g PF00400 WD40 WD domain, G-beta repeat Repeat
f PF01599 Ribosomal_S27 Ribosomal protein S27a Domain This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2]. PFAM PF01599
S PF00416 Ribosomal_S13 Ribosomal protein S13/S18 Family
X PF00164 Ribosom_S12_S23 Ribosomal protein S12/S23 Family
A PF00318 Ribosomal_S2 Ribosomal protein S2 Family
e PF04758 Ribosomal_S30 Ribosomal protein S30 Family
W PF00410 Ribosomal_S8 Ribosomal protein S8 Domain PFAM PF00410
g PF00400 WD40 WD domain, G-beta repeat Repeat
l PF01253 SUI1 Translation initiation factor SUI1 Domain PFAM PF01253
J PF00163 Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain Family
R PF00833 Ribosomal_S17e Ribosomal S17 Family
a PF01283 Ribosomal_S26e Ribosomal protein S26e Family
P PF00203 Ribosomal_S19 Ribosomal protein S19 Domain PFAM PF00203
E PF00467 KOW KOW motif Family
G PF01092 Ribosomal_S6e Ribosomal protein S6e Family
Z PF03297 Ribosomal_S25 S25 ribosomal protein Family
A PF00318 Ribosomal_S2 Ribosomal protein S2 Family
Q PF00380 Ribosomal_S9 Ribosomal protein S9/S16 Family
J PF01479 S4 S4 domain Domain The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA. PFAM PF01479
Y PF01282 Ribosomal_S24e Ribosomal protein S24e Family
L PF00366 Ribosomal_S17 Ribosomal protein S17 Domain PFAM PF00366
I PF01201 Ribosomal_S8e Ribosomal protein S8e Family
D PF00189 Ribosomal_S3_C Ribosomal protein S3, C-terminal domain Domain This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. PFAM PF00189

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A 40S ribosomal protein SA (4KZX:A)
B 40S ribosomal protein S3a (4KZX:B)
C 40S ribosomal protein S2 (4KZX:C)
D 40S ribosomal protein S3 (4KZX:D)
E 40S ribosomal protein S4X (4KZX:E)
F 40S ribosomal protein S5 (4KZX:F)
G 40S ribosomal protein S6 (4KZX:G)
H 40S ribosomal protein S7 (4KZX:H)
I 40S ribosomal protein S8 (4KZX:I)
J 40S Ribosomal protein S9 (4KZX:J)
K 40S ribosomal protein S10 (4KZX:K)
  • none
  • none
  • none
L 40S ribosomal protein S11 (4KZX:L)
M 40S ribosomal protein S12 (4KZX:M)
N 40S ribosomal protein S13 (4KZX:N)
O 40S ribosomal protein S14 (4KZX:O)
P 40S ribosomal protein S15 (4KZX:P)
Q 40S ribosomal protein S16 (4KZX:Q)
R 40S ribosomal protein S17 (4KZX:R)
S 40S ribosomal protein S18 (4KZX:S)
T 40S ribosomal protein S19 (4KZX:T)
U 40S ribosomal protein S20 (4KZX:U)
V 40S ribosomal protein S21 (4KZX:V)
W 40S ribosomal protein S15A (4KZX:W)
X 40S ribosomal protein S23 (4KZX:X)
Y 40S ribosomal protein S24 (4KZX:Y)
Z 40S ribosomal protein S25 (4KZX:Z)
  • none
  • none
  • none
a 40S ribosomal protein S26 (4KZX:a)
  • none
  • none
  • none
b 40S ribosomal protein S27 (4KZX:b)
  • none
  • none
  • none
c 40S ribosomal protein S28 (4KZX:c)
  • none
  • none
  • none
d 40S ribosomal protein S29 (4KZX:d)
  • none
  • none
  • none
e 40S ribosomal protein S30 (4KZX:e)
  • none
  • none
  • none
f 40S ribosomal protein S27A (4KZX:f)
  • none
  • none
  • none
g 40S ribosomal protein RACK1 (4KZX:g)
  • none
  • none
  • none
i 18S ribosomal RNA (4KZX:i)
  • none
  • none
  • none
l Eukaryotic translation initiation factor 1 (4KZX:l)
  • none
  • none
  • none