Macromolecule Annotations for the Entities in PDB 4KZX

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
N PF08069 Ribosomal_S13_N Ribosomal S13/S15 N-terminal domain Domain This domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1]. PFAM PF08069
Q PF00380 Ribosomal_S9 Ribosomal protein S9/S16 Family
b PF01667 Ribosomal_S27e Ribosomal protein S27 Family
E PF08071 RS4NT RS4NT (NUC023) domain Domain This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. PFAM PF08071
Y PF01282 Ribosomal_S24e Ribosomal protein S24e Family
H PF01251 Ribosomal_S7e Ribosomal protein S7e Family
X PF00164 Ribosom_S12_S23 Ribosomal protein S12/S23 Family
D PF07650 KH_2 KH domain Domain PFAM PF07650
A PF00318 Ribosomal_S2 Ribosomal protein S2 Family
V PF01249 Ribosomal_S21e Ribosomal protein S21e Family
E PF00467 KOW KOW motif Family
S PF00416 Ribosomal_S13 Ribosomal protein S13/S18 Family
a PF01283 Ribosomal_S26e Ribosomal protein S26e Family
J PF00163 Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain Family
D PF00189 Ribosomal_S3_C Ribosomal protein S3, C-terminal domain Domain This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. PFAM PF00189
R PF00833 Ribosomal_S17e Ribosomal S17 Family
B PF01015 Ribosomal_S3Ae Ribosomal S3Ae family Family
g PF00400 WD40 WD domain, G-beta repeat Repeat
J PF01479 S4 S4 domain Domain The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA. PFAM PF01479
C PF03719 Ribosomal_S5_C Ribosomal protein S5, C-terminal domain Domain PFAM PF03719
g PF00400 WD40 WD domain, G-beta repeat Repeat
C PF00333 Ribosomal_S5 Ribosomal protein S5, N-terminal domain Domain PFAM PF00333
A PF00318 Ribosomal_S2 Ribosomal protein S2 Family
P PF00203 Ribosomal_S19 Ribosomal protein S19 Domain PFAM PF00203
l PF01253 SUI1 Translation initiation factor SUI1 Domain PFAM PF01253
E PF00900 Ribosomal_S4e Ribosomal family S4e Family
T PF01090 Ribosomal_S19e Ribosomal protein S19e Family
I PF01201 Ribosomal_S8e Ribosomal protein S8e Family
G PF01092 Ribosomal_S6e Ribosomal protein S6e Family
O PF00411 Ribosomal_S11 Ribosomal protein S11 Family
g PF00400 WD40 WD domain, G-beta repeat Repeat
F PF00177 Ribosomal_S7 Ribosomal protein S7p/S5e Domain This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. PFAM PF00177
g PF00400 WD40 WD domain, G-beta repeat Repeat
e PF04758 Ribosomal_S30 Ribosomal protein S30 Family
d PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e Family
c PF01200 Ribosomal_S28e Ribosomal protein S28e Family
Z PF03297 Ribosomal_S25 S25 ribosomal protein Family
U PF00338 Ribosomal_S10 Ribosomal protein S10p/S20e Family
N PF00312 Ribosomal_S15 Ribosomal protein S15 Domain PFAM PF00312
M PF01248 Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Domain This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1]. PFAM PF01248
g PF00400 WD40 WD domain, G-beta repeat Repeat
W PF00410 Ribosomal_S8 Ribosomal protein S8 Domain PFAM PF00410
f PF01599 Ribosomal_S27 Ribosomal protein S27a Domain This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2]. PFAM PF01599
L PF00366 Ribosomal_S17 Ribosomal protein S17 Domain PFAM PF00366
g PF00400 WD40 WD domain, G-beta repeat Repeat
K PF03501 S10_plectin Plectin/S10 domain Domain This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. PFAM PF03501

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A 40S ribosomal protein SA (4KZX:A)
B 40S ribosomal protein S3a (4KZX:B)
C 40S ribosomal protein S2 (4KZX:C)
D 40S ribosomal protein S3 (4KZX:D)
E 40S ribosomal protein S4X (4KZX:E)
F 40S ribosomal protein S5 (4KZX:F)
G 40S ribosomal protein S6 (4KZX:G)
H 40S ribosomal protein S7 (4KZX:H)
I 40S ribosomal protein S8 (4KZX:I)
J 40S Ribosomal protein S9 (4KZX:J)
K 40S ribosomal protein S10 (4KZX:K)
  • none
  • none
  • none
L 40S ribosomal protein S11 (4KZX:L)
M 40S ribosomal protein S12 (4KZX:M)
N 40S ribosomal protein S13 (4KZX:N)
O 40S ribosomal protein S14 (4KZX:O)
P 40S ribosomal protein S15 (4KZX:P)
Q 40S ribosomal protein S16 (4KZX:Q)
R 40S ribosomal protein S17 (4KZX:R)
S 40S ribosomal protein S18 (4KZX:S)
T 40S ribosomal protein S19 (4KZX:T)
U 40S ribosomal protein S20 (4KZX:U)
V 40S ribosomal protein S21 (4KZX:V)
W 40S ribosomal protein S15A (4KZX:W)
X 40S ribosomal protein S23 (4KZX:X)
Y 40S ribosomal protein S24 (4KZX:Y)
Z 40S ribosomal protein S25 (4KZX:Z)
  • none
  • none
  • none
a 40S ribosomal protein S26 (4KZX:a)
  • none
  • none
  • none
b 40S ribosomal protein S27 (4KZX:b)
  • none
  • none
  • none
c 40S ribosomal protein S28 (4KZX:c)
  • none
  • none
  • none
d 40S ribosomal protein S29 (4KZX:d)
  • none
  • none
  • none
e 40S ribosomal protein S30 (4KZX:e)
  • none
  • none
  • none
f 40S ribosomal protein S27A (4KZX:f)
  • none
  • none
  • none
g 40S ribosomal protein RACK1 (4KZX:g)
  • none
  • none
  • none
i 18S ribosomal RNA (4KZX:i)
  • none
  • none
  • none
l Eukaryotic translation initiation factor 1 (4KZX:l)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description