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Crystallographic analysis of an RNA-polymerase sigma-subunit fragment complexed with -10 promoter element ssDNA
Annotation data related to this entry.
4KI2
  •   Protein Family Annotation: Pfam Classification   Hide
    Chain Pfam Accession Pfam Family Identifier Pfam Description Type Comment
    A PF00140   Sigma70_r1_2 Sigma-70 factor, region 1.2 Family
    A PF04542   Sigma70_r2 Sigma-70 region 2 Domain Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core binding helix, interacts with the clamp domain of the largest polymerase subunit, beta prime [1,2]. The aromatic residues of the recognition helix, found at the C-terminus of this domain are though to mediate strand separation, thereby allowing transcription initiation [1,2]. Source: Pfam  
     
  •   Gene Product Annotation: GO Terms   Hide
    Polymer Molecular Function Biological Process Cellular Component
    DNA (5'-D(*TP*GP*TP*AP*CP*AP*AP*TP*GP*GP*G)- 3') (4KI2:D,E,F,G)
    • none
    • none
    • none
    RNA polymerase sigma factor (4KI2:A,B)
    • none
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Annotations in orange boxes have been gathered from external resources.