Macromolecule Annotations for the Entities in PDB 4JI3

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
S PF00203 Ribosomal_S19 Ribosomal protein S19 Domain PFAM PF00203
F PF01250 Ribosomal_S6 Ribosomal protein S6 Domain PFAM PF01250
B PF00318 Ribosomal_S2 Ribosomal protein S2 Family
T PF01649 Ribosomal_S20p Ribosomal protein S20 Family
K PF00411 Ribosomal_S11 Ribosomal protein S11 Family
C PF07650 KH_2 KH domain Domain PFAM PF07650
G PF00177 Ribosomal_S7 Ribosomal protein S7p/S5e Domain This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. PFAM PF00177
D PF00163 Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain Family
I PF00380 Ribosomal_S9 Ribosomal protein S9/S16 Family
L PF00164 Ribosom_S12_S23 Ribosomal protein S12/S23 Family
R PF01084 Ribosomal_S18 Ribosomal protein S18 Family
E PF00333 Ribosomal_S5 Ribosomal protein S5, N-terminal domain Domain PFAM PF00333
O PF00312 Ribosomal_S15 Ribosomal protein S15 Domain PFAM PF00312
P PF00886 Ribosomal_S16 Ribosomal protein S16 Family
N PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e Family
H PF00410 Ribosomal_S8 Ribosomal protein S8 Domain PFAM PF00410
J PF00338 Ribosomal_S10 Ribosomal protein S10p/S20e Family
Q PF00366 Ribosomal_S17 Ribosomal protein S17 Domain PFAM PF00366
E PF03719 Ribosomal_S5_C Ribosomal protein S5, C-terminal domain Domain PFAM PF03719
C PF00189 Ribosomal_S3_C Ribosomal protein S3, C-terminal domain Domain This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. PFAM PF00189
D PF01479 S4 S4 domain Domain The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA. PFAM PF01479
M PF00416 Ribosomal_S13 Ribosomal protein S13/S18 Family

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A 16S rRNA (4JI3:A)
  • none
  • none
  • none
B RIBOSOMAL PROTEIN S2 (4JI3:B)
C RIBOSOMAL PROTEIN S3 (4JI3:C)
D RIBOSOMAL PROTEIN S4 (4JI3:D)
E RIBOSOMAL PROTEIN S5 (4JI3:E)
F RIBOSOMAL PROTEIN S6 (4JI3:F)
G RIBOSOMAL PROTEIN S7 (4JI3:G)
H RIBOSOMAL PROTEIN S8 (4JI3:H)
I RIBOSOMAL PROTEIN S9 (4JI3:I)
J RIBOSOMAL PROTEIN S10 (4JI3:J)
K RIBOSOMAL PROTEIN S11 (4JI3:K)
L RIBOSOMAL PROTEIN S12 (4JI3:L)
M RIBOSOMAL PROTEIN S13 (4JI3:M)
N RIBOSOMAL PROTEIN S14 (4JI3:N)
O RIBOSOMAL PROTEIN S15 (4JI3:O)
P RIBOSOMAL PROTEIN S16 (4JI3:P)
Q RIBOSOMAL PROTEIN S17 (4JI3:Q)
R RIBOSOMAL PROTEIN S18 (4JI3:R)
S RIBOSOMAL PROTEIN S19 (4JI3:S)
T RIBOSOMAL PROTEIN S20 (4JI3:T)
U RIBOSOMAL PROTEIN THX (4JI3:U)
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description