Crystal structure of LSD2-NPAC with H3 in space group P3221
Annotation data related to this entry.
  •   Protein Family Annotation: Pfam Classification   Hide
    Chain Pfam Accession Pfam Family Identifier Pfam Description Type Comment
    A PF01593   Amino_oxidase Flavin containing amine oxidoreductase Domain This family consists of various amine oxidases, including maze polyamine oxidase (PAO) [1] and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines [2]. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium [3]. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines [1]. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Source: Pfam  
    A PF01266   DAO FAD dependent oxidoreductase Domain This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:, Sarcosine oxidase beta subunit EC:, D-alanine oxidase EC:, D-aspartate oxidase EC: Source: Pfam  
    A PF07496   zf-CW CW-type Zinc Finger Domain This domain appears to be a zinc finger. The alignment shows four conserved cysteine residues and a conserved tryptophan. It was first identified by [1], and is predicted to be a "highly specialised mononuclear four-cysteine zinc finger...that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including ...chromatin methylation status and early embryonic development." Weak homology to Pfam:PF00628 further evidences these predictions (personal obs: C Yeats). Twelve different CW-domain-containing protein subfamilies are described, with different subfamilies being characteristic of vertebrates, higher plants and other animals in which these domain is found [1]. Source: Pfam  
    B PF02178   AT_hook AT hook motif Motif
    A PF01946   Thi4 Thi4 family Family
    A PF13450   NAD_binding_8 NAD(P)-binding Rossmann-like domain Domain Source: Pfam  
    A PF00070   Pyr_redox Pyridine nucleotide-disulphide oxidoreductase Domain This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Source: Pfam  
  •   Structural Biology Knowledgebase Data Hide
Annotations in orange boxes have been gathered from external resources.