Macromolecule Annotations for the Entities in PDB 4DV1

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
B2 4dv1B02 Mainly Alpha Orthogonal Bundle Helix Hairpins Helix hairpin bin
C1 4dv1C01 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3
C2 4dv1C02 Alpha Beta 2-Layer Sandwich Ribosomal protein S3 C-terminal domain
D1 4dv1D01 Mainly Alpha Orthogonal Bundle Ribosomal Protein S4 Delta 41; Chain A, domain 1 Ribosomal Protein S4 Delta 41; Chain A, domain 1
D2 4dv1D02 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA- pckA Intergenic Region; Chain A Structural Genomics Hypothetical 15.5 Kd Protein In Mrca- pcka Intergenic Region; Chain
E1 4dv1E01 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain
E2 4dv1E02 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2
F 4dv1F00 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
G 4dv1G00 Mainly Alpha Orthogonal Bundle Ribosomal Protein S7 Ribosomal Protein S7;
H2 4dv1H02 Alpha Beta 2-Layer Sandwich Dna Ligase; domain 1
I 4dv1I00 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2
K 4dv1K00 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
L 4dv1L00 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
M1 4dv1M01 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein; domain 3
M2 4dv1M02 Few Secondary Structures Irregular 30s ribosomal protein s13; domain 2 30s ribosomal protein s13, domain 2
N 4dv1N00 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N
O 4dv1O00 Mainly Alpha Orthogonal Bundle Helix Hairpins
R 4dv1R00 Few Secondary Structures Irregular 30s Ribosomal Protein S18 30s Ribosomal Protein S18
S 4dv1S00 Alpha Beta 2-Layer Sandwich 30s Ribosomal Protein S19; Chain A 30s Ribosomal Protein S19; Chain A
T 4dv1T00 Mainly Alpha Up-down Bundle Methane Monooxygenase Hydroxylase; Chain G, domain 1

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A 16S rRNA (4DV1:A)
  • none
  • none
  • none
B ribosomal protein S2 (4DV1:B)
C ribosomal protein S3 (4DV1:C)
D ribosomal protein S4 (4DV1:D)
E ribosomal protein S5 (4DV1:E)
F ribosomal protein S6 (4DV1:F)
G ribosomal protein S7 (4DV1:G)
H ribosomal protein S8 (4DV1:H)
I ribosomal protein S9 (4DV1:I)
J ribosomal protein S10 (4DV1:J)
K ribosomal protein S11 (4DV1:K)
L ribosomal protein S12 (4DV1:L)
M ribosomal protein S13 (4DV1:M)
N ribosomal protein S14 (4DV1:N)
O ribosomal protein S15 (4DV1:O)
P ribosomal protein S16 (4DV1:P)
Q ribosomal protein S17 (4DV1:Q)
R ribosomal protein S18 (4DV1:R)
S ribosomal protein S19 (4DV1:S)
T ribosomal protein S20 (4DV1:T)
U ribosomal protein THX (4DV1:U)
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description