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139555
Biological Macromolecular Structures Enabling Breakthroughs in Research and Education
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Structure Summary
3D View
Annotations
Sequence
Sequence Similarity
Structure Similarity
Experiment
4DV0
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G
Display Files
FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)
Download Files
FASTA Sequence
PDB File (Text)
PDB File (gz)
PDBx/mmCIF File
PDBx/mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Structure Factor (Text)
Structure Factor (gz)
Biological Assembly (gz) (A)
Macromolecule Annotations for the Entities in PDB 4DV0
Domain Annotation: CATH
CATH Database (version 4.0.0) Homepage
Chains
Domain
Class
Architecture
Topology
Homology
B2
4dv0B02
Mainly Alpha
Orthogonal Bundle
Helix Hairpins
Helix hairpin bin
C1
4dv0C01
Alpha Beta
2-Layer Sandwich
GMP Synthetase; Chain A, domain 3
C2
4dv0C02
Alpha Beta
2-Layer Sandwich
Ribosomal protein S3 C-terminal domain
D1
4dv0D01
Mainly Alpha
Orthogonal Bundle
Ribosomal Protein S4 Delta 41; Chain A, domain 1
Ribosomal Protein S4 Delta 41; Chain A, domain 1
D2
4dv0D02
Alpha Beta
Roll
Structural Genomics Hypothetical 15.5 Kd Protein In mrcA- pckA Intergenic Region; Chain A
Structural Genomics Hypothetical 15.5 Kd Protein In Mrca- pcka Intergenic Region; Chain
E1
4dv0E01
Alpha Beta
2-Layer Sandwich
Double Stranded RNA Binding Domain
E2
4dv0E02
Alpha Beta
2-Layer Sandwich
Ribosomal Protein S5; domain 2
F
4dv0F00
Alpha Beta
2-Layer Sandwich
Alpha-Beta Plaits
G
4dv0G00
Mainly Alpha
Orthogonal Bundle
Ribosomal Protein S7
Ribosomal Protein S7;
H2
4dv0H02
Alpha Beta
2-Layer Sandwich
Dna Ligase; domain 1
I
4dv0I00
Alpha Beta
2-Layer Sandwich
Ribosomal Protein S5; domain 2
K
4dv0K00
Alpha Beta
2-Layer Sandwich
Nucleotidyltransferase; domain 5
L
4dv0L00
Mainly Beta
Beta Barrel
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
Nucleic acid-binding proteins
M1
4dv0M01
Mainly Alpha
Orthogonal Bundle
Helicase, Ruva Protein; domain 3
M2
4dv0M02
Few Secondary Structures
Irregular
30s ribosomal protein s13; domain 2
30s ribosomal protein s13, domain 2
N
4dv0N00
Few Secondary Structures
Irregular
30s Ribosomal Protein S14; Chain N
30s Ribosomal Protein S14; Chain N
O
4dv0O00
Mainly Alpha
Orthogonal Bundle
Helix Hairpins
R
4dv0R00
Few Secondary Structures
Irregular
30s Ribosomal Protein S18
30s Ribosomal Protein S18
S
4dv0S00
Alpha Beta
2-Layer Sandwich
30s Ribosomal Protein S19; Chain A
30s Ribosomal Protein S19; Chain A
T
4dv0T00
Mainly Alpha
Up-down Bundle
Methane Monooxygenase Hydroxylase; Chain G, domain 1
Protein Family Annotation
Pfam Database Homepage
Chains
Pfam Accession
Pfam Identifier
Pfam Description
Type
Source
Gene Product Annotation
Gene Ontology Consortium Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
16S rRNA (4DV0:A)
none
none
none
B
ribosomal protein S2 (4DV0:B)
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Intracellular
Ribosome
Small Ribosomal Subunit
C
ribosomal protein S3 (4DV0:C)
Nucleic Acid Binding
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Ribosome
Small Ribosomal Subunit
D
ribosomal protein S4 (4DV0:D)
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Metal Ion Binding
Translation
Intracellular
Ribosome
Small Ribosomal Subunit
E
ribosomal protein S5 (4DV0:E)
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Ribosome
Small Ribosomal Subunit
F
ribosomal protein S6 (4DV0:F)
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Ribosome
G
ribosomal protein S7 (4DV0:G)
TRNA Binding
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Ribosome
Small Ribosomal Subunit
H
ribosomal protein S8 (4DV0:H)
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Ribosome
I
ribosomal protein S9 (4DV0:I)
TRNA Binding
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Ribosome
J
ribosomal protein S10 (4DV0:J)
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Intracellular
Ribosome
K
ribosomal protein S11 (4DV0:K)
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Intracellular
Ribosome
L
ribosomal protein S12 (4DV0:L)
TRNA Binding
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Intracellular
Ribosome
Small Ribosomal Subunit
M
ribosomal protein S13 (4DV0:M)
TRNA Binding
Nucleic Acid Binding
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Intracellular
Ribosome
N
ribosomal protein S14 (4DV0:N)
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Metal Ion Binding
Translation
Intracellular
Ribosome
O
ribosomal protein S15 (4DV0:O)
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Intracellular
Ribosome
P
ribosomal protein S16 (4DV0:P)
Structural Constituent of Ribosome
Translation
Intracellular
Ribosome
Q
ribosomal protein S17 (4DV0:Q)
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Intracellular
Ribosome
R
ribosomal protein S18 (4DV0:R)
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Intracellular
Ribosome
S
ribosomal protein S19 (4DV0:S)
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Ribosome
Small Ribosomal Subunit
T
ribosomal protein S20 (4DV0:T)
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Intracellular
Ribosome
U
ribosomal protein THX (4DV0:U)
RNA Binding
RRNA Binding
none
Ribosome
Protein Modification Annotation
Type
PDB Residue Nr.
Description