Macromolecule Annotations for the Entities in PDB 4DUY

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
B2 4duyB02 Mainly Alpha Orthogonal Bundle Helix Hairpins Helix hairpin bin
C1 4duyC01 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3
C2 4duyC02 Alpha Beta 2-Layer Sandwich Ribosomal protein S3 C-terminal domain
D1 4duyD01 Mainly Alpha Orthogonal Bundle Ribosomal Protein S4 Delta 41; Chain A, domain 1 Ribosomal Protein S4 Delta 41; Chain A, domain 1
D2 4duyD02 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA- pckA Intergenic Region; Chain A Structural Genomics Hypothetical 15.5 Kd Protein In Mrca- pcka Intergenic Region; Chain
E1 4duyE01 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain
E2 4duyE02 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2
F 4duyF00 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
G 4duyG00 Mainly Alpha Orthogonal Bundle Ribosomal Protein S7 Ribosomal Protein S7;
H2 4duyH02 Alpha Beta 2-Layer Sandwich Dna Ligase; domain 1
I 4duyI00 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2
K 4duyK00 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
L 4duyL00 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
M1 4duyM01 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein; domain 3
M2 4duyM02 Few Secondary Structures Irregular 30s ribosomal protein s13; domain 2 30s ribosomal protein s13, domain 2
N 4duyN00 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N
O 4duyO00 Mainly Alpha Orthogonal Bundle Helix Hairpins
R 4duyR00 Few Secondary Structures Irregular 30s Ribosomal Protein S18 30s Ribosomal Protein S18
S 4duyS00 Alpha Beta 2-Layer Sandwich 30s Ribosomal Protein S19; Chain A 30s Ribosomal Protein S19; Chain A
T 4duyT00 Mainly Alpha Up-down Bundle Methane Monooxygenase Hydroxylase; Chain G, domain 1

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A 16S rRNA (4DUY:A)
  • none
  • none
  • none
B ribosomal protein S2 (4DUY:B)
C ribosomal protein S3 (4DUY:C)
D ribosomal protein S4 (4DUY:D)
E ribosomal protein S5 (4DUY:E)
F ribosomal protein S6 (4DUY:F)
G ribosomal protein S7 (4DUY:G)
H ribosomal protein S8 (4DUY:H)
I ribosomal protein S9 (4DUY:I)
J ribosomal protein S10 (4DUY:J)
K ribosomal protein S11 (4DUY:K)
L ribosomal protein S12 (4DUY:L)
M ribosomal protein S13 (4DUY:M)
N ribosomal protein S14 (4DUY:N)
O ribosomal protein S15 (4DUY:O)
P ribosomal protein S16 (4DUY:P)
Q ribosomal protein S17 (4DUY:Q)
R ribosomal protein S18 (4DUY:R)
S ribosomal protein S19 (4DUY:S)
T ribosomal protein S20 (4DUY:T)
U ribosomal protein THX (4DUY:U)
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description