4DR6

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position and streptomycin bound


Macromolecule Annotations for the Entities in PDB 4DR6

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
B1 4dr6B01 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Glucose-6-phosphate isomerase like protein; domain 1
B2 4dr6B02 Mainly Alpha Orthogonal Bundle Helix Hairpins Helix hairpin bin
C1 4dr6C01 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3
C2 4dr6C02 Alpha Beta 2-Layer Sandwich Ribosomal protein S3 C-terminal domain
D1 4dr6D01 Mainly Alpha Orthogonal Bundle Ribosomal Protein S4 Delta 41; Chain A, domain 1 Ribosomal Protein S4 Delta 41; Chain A, domain 1
D2 4dr6D02 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA- pckA Intergenic Region; Chain A Structural Genomics Hypothetical 15.5 Kd Protein In Mrca- pcka Intergenic Region; Chain
E1 4dr6E01 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain
E2 4dr6E02 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2
F 4dr6F00 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
G 4dr6G00 Mainly Alpha Orthogonal Bundle Ribosomal Protein S7 Ribosomal Protein S7;
H2 4dr6H02 Alpha Beta 2-Layer Sandwich Dna Ligase; domain 1
I 4dr6I00 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2
K 4dr6K00 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
L 4dr6L00 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
M1 4dr6M01 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein; domain 3
M2 4dr6M02 Few Secondary Structures Irregular 30s ribosomal protein s13; domain 2 30s ribosomal protein s13, domain 2
N 4dr6N00 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N
O 4dr6O00 Mainly Alpha Orthogonal Bundle Helix Hairpins
R 4dr6R00 Few Secondary Structures Irregular 30s Ribosomal Protein S18 30s Ribosomal Protein S18
S 4dr6S00 Alpha Beta 2-Layer Sandwich 30s Ribosomal Protein S19; Chain A 30s Ribosomal Protein S19; Chain A
T 4dr6T00 Mainly Alpha Up-down Bundle Methane Monooxygenase Hydroxylase; Chain G, domain 1

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A 16S rRNA (4DR6:A)
  • none
  • none
  • none
B 30S ribosomal protein S2 (4DR6:B)
C 30S ribosomal protein S3 (4DR6:C)
D 30S ribosomal protein S4 (4DR6:D)
E 30S ribosomal protein S5 (4DR6:E)
F 30S ribosomal protein S6 (4DR6:F)
G 30S ribosomal protein S7 (4DR6:G)
H 30S ribosomal protein S8 (4DR6:H)
I 30S ribosomal protein S9 (4DR6:I)
J 30S ribosomal protein S10 (4DR6:J)
K 30S ribosomal protein S11 (4DR6:K)
L 30S ribosomal protein S12 (4DR6:L)
M 30S ribosomal protein S13 (4DR6:M)
N 30S ribosomal protein S14 (4DR6:N)
O 30S ribosomal protein S15 (4DR6:O)
P 30S ribosomal protein S16 (4DR6:P)
Q 30S ribosomal protein S17 (4DR6:Q)
R 30S ribosomal protein S18 (4DR6:R)
S 30S ribosomal protein S19 (4DR6:S)
T 30S ribosomal protein S20 (4DR6:T)
U 30S ribosomal protein THX (4DR6:U)
  • none
V 5'-R(*UP*UP*UP*U)-3' (4DR6:V)
  • none
  • none
  • none
W 5'-R(P*UP*UP*GP*AP*GP*GP*(PSU)P*GP*G)-3' (4DR6:W)
  • none
  • none
  • none
a 5'-R(P*CP*UP*UP*GP*AP*GP*GP*(PSU)P*GP*GP*U)- 3' (4DR6:a)
  • none
  • none
  • none
b 5'-R(*UP*UP*U)-3' (4DR6:b)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description