Warning
You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.
MyPDB
Toggle navigation
RCSB PDB
Deposit
Prepare Data
pdb_extract
SF-Tool
Ligand Expo
MAXIT
Validate Data
Validation Server
Information for Journals
Validation Task Forces
Deposit Data
wwPDB OneDep System
Deposition Help & Resources
Deposit FAQ
Tutorials
Annotation Policies
Processing Procedures
PDBx/mmCIF Dictionary
Chemical Component Dictionary
PDB Format Guide
BioSync Beamlines/Facilities
Related Tools
Search
Advanced Search
Drilldown Search
Unreleased & New Entries
Sequences
Ligands
Drugs & Drug Targets
Browse by Annotation
PDB Statistics
Visualize
Visualize3DViewer
PoseView
Protein Feature View
Human Gene View
Pathway View
Analyze
Sequence & Structure Alignment
Protein Symmetry
Structure Quality
Map Genomic Position to Protein
PDB Statistics
Third Party Tools
Download
Coordinates & Experimental Data
Sequences
Ligands
FTP Archive & Services
HTTPS Services
Other Services
RESTful Web Services
Learn
About
Molecule of the Month
Browse all Resources
Educational Resources
Curricula
Guide to PDB Data
News and Events
More
Contact Us
Citing Us
Usage & Privacy
Help Topics
About RCSB PDB
Team Members
Advisory Committee
News
Publications
Careers
139555
Biological Macromolecular Structures Enabling Breakthroughs in Research and Education
Go
Advanced
Search
|
Browse
by Annotations
|
Search
History
|
Previous
Results
Navigation Tabs
Structure Summary
3D View
Annotations
Sequence
Sequence Similarity
Structure Similarity
Experiment
4DR2
Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with multiple copies of paromomycin molecules bound
Display Files
FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)
Download Files
FASTA Sequence
PDB File (Text)
PDB File (gz)
PDBx/mmCIF File
PDBx/mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Structure Factor (Text)
Structure Factor (gz)
Biological Assembly (gz) (A)
Macromolecule Annotations for the Entities in PDB 4DR2
Domain Annotation: CATH
CATH Database (version 4.0.0) Homepage
Chains
Domain
Class
Architecture
Topology
Homology
B1
4dr2B01
Alpha Beta
3-Layer(aba) Sandwich
Rossmann fold
Glucose-6-phosphate isomerase like protein; domain 1
B2
4dr2B02
Mainly Alpha
Orthogonal Bundle
Helix Hairpins
Helix hairpin bin
C1
4dr2C01
Alpha Beta
2-Layer Sandwich
GMP Synthetase; Chain A, domain 3
C2
4dr2C02
Alpha Beta
2-Layer Sandwich
Ribosomal protein S3 C-terminal domain
D1
4dr2D01
Mainly Alpha
Orthogonal Bundle
Ribosomal Protein S4 Delta 41; Chain A, domain 1
Ribosomal Protein S4 Delta 41; Chain A, domain 1
D2
4dr2D02
Alpha Beta
Roll
Structural Genomics Hypothetical 15.5 Kd Protein In mrcA- pckA Intergenic Region; Chain A
Structural Genomics Hypothetical 15.5 Kd Protein In Mrca- pcka Intergenic Region; Chain
E1
4dr2E01
Alpha Beta
2-Layer Sandwich
Double Stranded RNA Binding Domain
E2
4dr2E02
Alpha Beta
2-Layer Sandwich
Ribosomal Protein S5; domain 2
F
4dr2F00
Alpha Beta
2-Layer Sandwich
Alpha-Beta Plaits
G
4dr2G00
Mainly Alpha
Orthogonal Bundle
Ribosomal Protein S7
Ribosomal Protein S7;
H2
4dr2H02
Alpha Beta
2-Layer Sandwich
Dna Ligase; domain 1
I
4dr2I00
Alpha Beta
2-Layer Sandwich
Ribosomal Protein S5; domain 2
K
4dr2K00
Alpha Beta
2-Layer Sandwich
Nucleotidyltransferase; domain 5
L
4dr2L00
Mainly Beta
Beta Barrel
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
Nucleic acid-binding proteins
M1
4dr2M01
Mainly Alpha
Orthogonal Bundle
Helicase, Ruva Protein; domain 3
M2
4dr2M02
Few Secondary Structures
Irregular
30s ribosomal protein s13; domain 2
30s ribosomal protein s13, domain 2
N
4dr2N00
Few Secondary Structures
Irregular
30s Ribosomal Protein S14; Chain N
30s Ribosomal Protein S14; Chain N
O
4dr2O00
Mainly Alpha
Orthogonal Bundle
Helix Hairpins
R
4dr2R00
Few Secondary Structures
Irregular
30s Ribosomal Protein S18
30s Ribosomal Protein S18
S
4dr2S00
Alpha Beta
2-Layer Sandwich
30s Ribosomal Protein S19; Chain A
30s Ribosomal Protein S19; Chain A
T
4dr2T00
Mainly Alpha
Up-down Bundle
Methane Monooxygenase Hydroxylase; Chain G, domain 1
Protein Family Annotation
Pfam Database Homepage
Chains
Pfam Accession
Pfam Identifier
Pfam Description
Type
Source
Gene Product Annotation
Gene Ontology Consortium Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
16S rRNA (4DR2:A)
none
none
none
B
30S ribosomal protein S2 (4DR2:B)
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Intracellular
Ribosome
Small Ribosomal Subunit
C
30S ribosomal protein S3 (4DR2:C)
Nucleic Acid Binding
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Ribosome
Small Ribosomal Subunit
D
30S ribosomal protein S4 (4DR2:D)
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Metal Ion Binding
Translation
Intracellular
Ribosome
Small Ribosomal Subunit
E
30S ribosomal protein S5 (4DR2:E)
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Ribosome
Small Ribosomal Subunit
F
30S ribosomal protein S6 (4DR2:F)
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Ribosome
G
30S ribosomal protein S7 (4DR2:G)
TRNA Binding
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Ribosome
Small Ribosomal Subunit
H
30S ribosomal protein S8 (4DR2:H)
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Ribosome
I
30S ribosomal protein S9 (4DR2:I)
TRNA Binding
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Ribosome
J
30S ribosomal protein S10 (4DR2:J)
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Intracellular
Ribosome
K
30S ribosomal protein S11 (4DR2:K)
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Intracellular
Ribosome
L
30S ribosomal protein S12 (4DR2:L)
TRNA Binding
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Intracellular
Ribosome
Small Ribosomal Subunit
M
30S ribosomal protein S13 (4DR2:M)
TRNA Binding
Nucleic Acid Binding
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Intracellular
Ribosome
N
30S ribosomal protein S14 (4DR2:N)
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Metal Ion Binding
Translation
Intracellular
Ribosome
O
30S ribosomal protein S15 (4DR2:O)
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Intracellular
Ribosome
P
30S ribosomal protein S16 (4DR2:P)
Structural Constituent of Ribosome
Translation
Intracellular
Ribosome
Q
30S ribosomal protein S17 (4DR2:Q)
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Intracellular
Ribosome
R
30S ribosomal protein S18 (4DR2:R)
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Intracellular
Ribosome
S
30S ribosomal protein S19 (4DR2:S)
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Ribosome
Small Ribosomal Subunit
T
30S ribosomal protein S20 (4DR2:T)
RNA Binding
Structural Constituent of Ribosome
RRNA Binding
Translation
Intracellular
Ribosome
U
30S ribosomal protein THX (4DR2:U)
RNA Binding
RRNA Binding
none
Ribosome
Protein Modification Annotation
Type
PDB Residue Nr.
Description