Macromolecule Annotations for the Entities in PDB 4DR1

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
B2 4dr1B02 Mainly Alpha Orthogonal Bundle Helix Hairpins Helix hairpin bin
C1 4dr1C01 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3
C2 4dr1C02 Alpha Beta 2-Layer Sandwich Ribosomal protein S3 C-terminal domain
D1 4dr1D01 Mainly Alpha Orthogonal Bundle Ribosomal Protein S4 Delta 41; Chain A, domain 1 Ribosomal Protein S4 Delta 41; Chain A, domain 1
D2 4dr1D02 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA- pckA Intergenic Region; Chain A Structural Genomics Hypothetical 15.5 Kd Protein In Mrca- pcka Intergenic Region; Chain
E1 4dr1E01 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain
E2 4dr1E02 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2
F 4dr1F00 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
G 4dr1G00 Mainly Alpha Orthogonal Bundle Ribosomal Protein S7 Ribosomal Protein S7;
H2 4dr1H02 Alpha Beta 2-Layer Sandwich Dna Ligase; domain 1
I 4dr1I00 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2
K 4dr1K00 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
L 4dr1L00 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
M1 4dr1M01 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein; domain 3
M2 4dr1M02 Few Secondary Structures Irregular 30s ribosomal protein s13; domain 2 30s ribosomal protein s13, domain 2
N 4dr1N00 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N
O 4dr1O00 Mainly Alpha Orthogonal Bundle Helix Hairpins
R 4dr1R00 Few Secondary Structures Irregular 30s Ribosomal Protein S18 30s Ribosomal Protein S18
S 4dr1S00 Alpha Beta 2-Layer Sandwich 30s Ribosomal Protein S19; Chain A 30s Ribosomal Protein S19; Chain A
T 4dr1T00 Mainly Alpha Up-down Bundle Methane Monooxygenase Hydroxylase; Chain G, domain 1

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A 16S rRNA (4DR1:A)
  • none
  • none
  • none
B 30S ribosomal protein S2 (4DR1:B)
C 30S ribosomal protein S3 (4DR1:C)
D 30S ribosomal protein S4 (4DR1:D)
E 30S ribosomal protein S5 (4DR1:E)
F 30S ribosomal protein S6 (4DR1:F)
G 30S ribosomal protein S7 (4DR1:G)
H 30S ribosomal protein S8 (4DR1:H)
I 30S ribosomal protein S9 (4DR1:I)
J 30S ribosomal protein S10 (4DR1:J)
K 30S ribosomal protein S11 (4DR1:K)
L 30S ribosomal protein S12 (4DR1:L)
M 30S ribosomal protein S13 (4DR1:M)
N 30S ribosomal protein S14 (4DR1:N)
O 30S ribosomal protein S15 (4DR1:O)
P 30S ribosomal protein S16 (4DR1:P)
Q 30S ribosomal protein S17 (4DR1:Q)
R 30S ribosomal protein S18 (4DR1:R)
S 30S ribosomal protein S19 (4DR1:S)
T 30S ribosomal protein S20 (4DR1:T)
U 30S ribosomal protein THX (4DR1:U)
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description