POP-OUT | CLOSE
 
The crystal structure of the eukaryotic 40S ribosomal subunit in complex with eIF1 and eIF1A - Complex 2
Annotation data related to this entry.
4BPN
  •   Protein Family Annotation: Pfam Classification   Hide
    Chain Pfam Accession Pfam Family Identifier Pfam Description Type Comment
    E PF03719   Ribosomal_S5_C Ribosomal protein S5, C-terminal domain Domain Source: Pfam  
    N PF00253   Ribosomal_S14 Ribosomal protein S14p/S29e Family
    3 PF01251   Ribosomal_S7e Ribosomal protein S7e Family
    0 PF01176   eIF-1a Translation initiation factor 1A / IF-1 Domain This family includes both the eukaryotic translation factor eIF-1A and the bacterial translation initiation factor IF-1. Source: Pfam  
    8 PF03297   Ribosomal_S25 S25 ribosomal protein Family
    R PF00400   WD40 WD domain, G-beta repeat Repeat
    R PF00400   WD40 WD domain, G-beta repeat Repeat
    B PF00318   Ribosomal_S2 Ribosomal protein S2 Family
    C PF07650   KH_2 KH domain Domain Source: Pfam  
    L PF00164   Ribosom_S12_S23 Ribosomal protein S12/S23 Family
    5 PF01283   Ribosomal_S26e Ribosomal protein S26e Family
    X PF04758   Ribosomal_S30 Ribosomal protein S30 Family
    P PF01282   Ribosomal_S24e Ribosomal protein S24e Family
    1 PF01200   Ribosomal_S28e Ribosomal protein S28e Family
    9 PF01599   Ribosomal_S27 Ribosomal protein S27a Domain This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2]. Source: Pfam  
    D PF01479   S4 S4 domain Domain The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA. Source: Pfam  
    E PF00333   Ribosomal_S5 Ribosomal protein S5, N-terminal domain Domain Source: Pfam  
    Y PF01092   Ribosomal_S6e Ribosomal protein S6e Family
    Z PF01249   Ribosomal_S21e Ribosomal protein S21e Family
    6 PF01667   Ribosomal_S27e Ribosomal protein S27 Family
    M PF00416   Ribosomal_S13 Ribosomal protein S13/S18 Family
    7 PF03501   S10_plectin Plectin/S10 domain Domain This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. Source: Pfam  
    4 PF01015   Ribosomal_S3Ae Ribosomal S3Ae family Family
    W PF00900   Ribosomal_S4e Ribosomal family S4e Family
    G PF00177   Ribosomal_S7 Ribosomal protein S7p/S5e Domain This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Source: Pfam  
    O PF08069   Ribosomal_S13_N Ribosomal S13/S15 N-terminal domain Domain This domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1]. Source: Pfam  
    I PF00380   Ribosomal_S9 Ribosomal protein S9/S16 Family
    O PF00312   Ribosomal_S15 Ribosomal protein S15 Domain Source: Pfam  
    Q PF00366   Ribosomal_S17 Ribosomal protein S17 Domain Source: Pfam  
    C PF00189   Ribosomal_S3_C Ribosomal protein S3, C-terminal domain Domain This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Source: Pfam  
    R PF00400   WD40 WD domain, G-beta repeat Repeat
    T PF01090   Ribosomal_S19e Ribosomal protein S19e Family
    D PF00163   Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain Family
    J PF00338   Ribosomal_S10 Ribosomal protein S10p/S20e Family
    S PF00203   Ribosomal_S19 Ribosomal protein S19 Domain Source: Pfam  
    R PF00400   WD40 WD domain, G-beta repeat Repeat
    F PF01253   SUI1 Translation initiation factor SUI1 Domain Source: Pfam  
    2 PF01201   Ribosomal_S8e Ribosomal protein S8e Family
    K PF00411   Ribosomal_S11 Ribosomal protein S11 Family
    U PF01248   Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Domain This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1]. Source: Pfam  
    W PF08071   RS4NT RS4NT (NUC023) domain Domain This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. Source: Pfam  
    R PF00400   WD40 WD domain, G-beta repeat Repeat
    V PF00833   Ribosomal_S17e Ribosomal S17 Family
    H PF00410   Ribosomal_S8 Ribosomal protein S8 Domain Source: Pfam  
     
  •   Gene Product Annotation: GO Terms   Hide
    Polymer Molecular Function Biological Process Cellular Component
    TRANSLATION INITIATION FACTOR EIF-1A FAMILY PROTEIN (4BPN:0)
    • none
    40S RIBOSOMAL PROTEIN RPS28E (4BPN:1)
    • none
    • none
    40S RIBOSOMAL PROTEIN S8 (4BPN:2)
    • none
    • none
    40S RIBOSOMAL PROTEIN RPS7E (4BPN:3)
    • none
    • none
    40S RIBOSOMAL PROTEIN S3A (4BPN:4)
    • none
    • none
    40S RIBOSOMAL PROTEIN RPS26E (4BPN:5)
    • none
    40S RIBOSOMAL PROTEIN S27 (4BPN:6)
    • none
    40S RIBOSOMAL PROTEIN RPS10E (4BPN:7)
    • none
    • none
    40S RIBOSOMAL PROTEIN RPS25E (4BPN:8)
    • none
    • none
    40S RIBOSOMAL PROTEIN RPS31E (4BPN:9)
    • none
    • none
    18S RRNA (4BPN:A)
    • none
    • none
    • none
    40S RIBOSOMAL PROTEIN SA (4BPN:B)
    • none
    • none
    40S RIBOSOMAL PROTEIN RPS3E (4BPN:C)
    • none
    • none
    40S RIBOSOMAL PROTEIN RPS9E (4BPN:D)
    • none
    • none
    40S RIBOSOMAL PROTEIN RPS2E (4BPN:E)
    • none
    • none
    EIF1 (4BPN:F)
    • none
    40S RIBOSOMAL PROTEIN RPS5E (4BPN:G)
    • none
    • none
    40S RIBOSOMAL PROTEIN RPS22E (4BPN:H)
    • none
    • none
    40S RIBOSOMAL PROTEIN RPS16E (4BPN:I)
    • none
    • none
    40S RIBOSOMAL PROTEIN RPS20E (4BPN:J)
    • none
    • none
    40S RIBOSOMAL PROTEIN RPS14E (4BPN:K)
    • none
    • none
    40S RIBOSOMAL PROTEIN S12 (4BPN:L)
    • none
    • none
    40S RIBOSOMAL PROTEIN RPS18E (4BPN:M)
    • none
    • none
    40S RIBOSOMAL PROTEIN RPS29E (4BPN:N)
    • none
    • none
    40S RIBOSOMAL PROTEIN RPS13E (4BPN:O)
    • none
    • none
    40S RIBOSOMAL PROTEIN S24 (4BPN:P)
    • none
    • none
    40S RIBOSOMAL PROTEIN RPS11E (4BPN:Q)
    • none
    • none
    40S RIBOSOMAL PROTEIN RACK1 (4BPN:R)
    • none
    • none
    40S RIBOSOMAL PROTEIN RPS15E (4BPN:S)
    • none
    • none
    40S RIBOSOMAL PROTEIN RPS19E (4BPN:T)
    • none
    • none
    40S RIBOSOMAL PROTEIN RPS12E (4BPN:U)
    • none
    • none
    40S RIBOSOMAL PROTEIN RPS17E (4BPN:V)
    • none
    • none
    40S RIBOSOMAL PROTEIN RPS4E (4BPN:W)
    • none
    • none
    40S RIBOSOMAL PROTEIN RPS30E (4BPN:X)
    • none
    • none
    40S RIBOSOMAL PROTEIN S6 (4BPN:Y)
    • none
    • none
    40S RIBOSOMAL PROTEIN RPS21E (4BPN:Z)
    • none
    • none
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Annotations in orange boxes have been gathered from external resources.