Macromolecule Annotations for the Entities in PDB 4B3M

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
T PF01649 Ribosomal_S20p Ribosomal protein S20 Family
B PF00318 Ribosomal_S2 Ribosomal protein S2 Family
H PF00410 Ribosomal_S8 Ribosomal protein S8 Domain PFAM PF00410
S PF00203 Ribosomal_S19 Ribosomal protein S19 Domain PFAM PF00203
Q PF00366 Ribosomal_S17 Ribosomal protein S17 Domain PFAM PF00366
M PF00416 Ribosomal_S13 Ribosomal protein S13/S18 Family
C PF07650 KH_2 KH domain Domain PFAM PF07650
N PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e Family
I PF00380 Ribosomal_S9 Ribosomal protein S9/S16 Family
O PF00312 Ribosomal_S15 Ribosomal protein S15 Domain PFAM PF00312
R PF01084 Ribosomal_S18 Ribosomal protein S18 Family
D PF00163 Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain Family
D PF01479 S4 S4 domain Domain The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA. PFAM PF01479
E PF00333 Ribosomal_S5 Ribosomal protein S5, N-terminal domain Domain PFAM PF00333
E PF03719 Ribosomal_S5_C Ribosomal protein S5, C-terminal domain Domain PFAM PF03719
G PF00177 Ribosomal_S7 Ribosomal protein S7p/S5e Domain This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. PFAM PF00177
K PF00411 Ribosomal_S11 Ribosomal protein S11 Family
P PF00886 Ribosomal_S16 Ribosomal protein S16 Family
L PF00164 Ribosom_S12_S23 Ribosomal protein S12/S23 Family
C PF00189 Ribosomal_S3_C Ribosomal protein S3, C-terminal domain Domain This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. PFAM PF00189
F PF01250 Ribosomal_S6 Ribosomal protein S6 Domain PFAM PF01250
J PF00338 Ribosomal_S10 Ribosomal protein S10p/S20e Family

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A 16S RIBOSOMAL RNA (4B3M:A)
  • none
  • none
  • none
B 30S RIBOSOMAL PROTEIN S2 (4B3M:B)
C 30S RIBOSOMAL PROTEIN S3 (4B3M:C)
D 30S RIBOSOMAL PROTEIN S4 (4B3M:D)
E 30S RIBOSOMAL PROTEIN S5 (4B3M:E)
F 30S RIBOSOMAL PROTEIN S6 (4B3M:F)
G 30S RIBOSOMAL PROTEIN S7 (4B3M:G)
H 30S RIBOSOMAL PROTEIN S8 (4B3M:H)
I 30S RIBOSOMAL PROTEIN S9 (4B3M:I)
J 30S RIBOSOMAL PROTEIN S10 (4B3M:J)
K 30S RIBOSOMAL PROTEIN S11 (4B3M:K)
L 30S RIBOSOMAL PROTEIN S12 (4B3M:L)
M 30S RIBOSOMAL PROTEIN S13 (4B3M:M)
N 30S RIBOSOMAL PROTEIN S14 TYPE Z (4B3M:N)
O 30S RIBOSOMAL PROTEIN S15 (4B3M:O)
P 30S RIBOSOMAL PROTEIN S16 (4B3M:P)
Q 30S RIBOSOMAL PROTEIN S17 (4B3M:Q)
R 30S RIBOSOMAL PROTEIN S18 (4B3M:R)
S 30S RIBOSOMAL PROTEIN S19 (4B3M:S)
T 30S RIBOSOMAL PROTEIN S20 (4B3M:T)
V 30S RIBOSOMAL PROTEIN THX (4B3M:V)
  • none
W 5'-R(*UP*UP*CP*AP*AP*AP)-3' (4B3M:W)
  • none
  • none
  • none
Z 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*CP)- 3' (4B3M:Z)
  • none
  • none
  • none