Macromolecule Annotations for the Entities in PDB 4AWJ

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A 4awjA00 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
B 4awjB00 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A
C1 4awjC01 Mainly Beta Sandwich Immunoglobulin-like
C2 4awjC02 Mainly Alpha Orthogonal Bundle Elongin C; Chain C, domain 1 Elongin C, Chain C domain 1
D 4awjD00 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
E 4awjE00 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A
F1 4awjF01 Mainly Beta Sandwich Immunoglobulin-like
F2 4awjF02 Mainly Alpha Orthogonal Bundle Elongin C; Chain C, domain 1 Elongin C, Chain C domain 1
G 4awjG00 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
H 4awjH00 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A
I1 4awjI01 Mainly Beta Sandwich Immunoglobulin-like
I2 4awjI02 Mainly Alpha Orthogonal Bundle Elongin C; Chain C, domain 1 Elongin C, Chain C domain 1
J 4awjJ00 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
K 4awjK00 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A
L1 4awjL01 Mainly Beta Sandwich Immunoglobulin-like
L2 4awjL02 Mainly Alpha Orthogonal Bundle Elongin C; Chain C, domain 1 Elongin C, Chain C domain 1

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF00240 ubiquitin Ubiquitin family Domain This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5]. PFAM PF00240
B PF03931 Skp1_POZ Skp1 family, tetramerisation domain Domain PFAM PF03931
C PF01847 VHL von Hippel-Lindau disease tumour suppressor protein Domain VHL forms a ternary complex with the elonginB Swiss:O44226 and elonginC Swiss:O13292 proteins. This complex binds Cul2, which then is involved in regulation of vascular endothelial growth factor Swiss:P15692 mRNA. PFAM PF01847

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,D,G,J TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2 (4AWJ:A,D,G,J)
  • none
  • none
  • none
B,E,H,K TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1 (4AWJ:B,E,H,K)
  • none
  • none
C,F,I,L VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR (4AWJ:C,F,I,L)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description